RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SMC1AQ14683 1233 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 ZNF827Q17R98 1081 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 AKNAD1Q5T1N1 836 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 APTXQ7Z2E3 356 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 SYNE4Q8N205 404 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 NAA15Q9BXJ9 866 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 FUT8Q9BYC5 575 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 KCNJ14Q9UNX9 436 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 CEP131Q9UPN4 1083 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 PCDHB6Q9Y5E3 794 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 DCCP43146 1447 aa16.95■□□□□ 0.3
SMARCA4-219ENST00000592604 POLR3GO15318 223 aaPredicted RBP16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 DEXIO95424 95 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 TXLNAP40222 546 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 HNRNPH2P55795 449 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 MTA3Q9BTC8 594 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 TEX13AQ9BXU3 409 aaPredicted RBP16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 NAPBQ9H115 298 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 MRPL44Q9H9J2 332 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 OAS2P29728 719 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 CTSWP56202 376 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 CTDSPL2Q05D32 466 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 DESI2Q9BSY9 194 aa16.94■□□□□ 0.3
SMARCA4-219ENST00000592604 CCDC151A5D8V7 595 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 TULP2O00295 520 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 RCAN1P53805 252 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 RTN1Q16799 776 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 CRACR2BQ8N4Y2 399 aaPredicted RBP16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 CCDC12Q8WUD4 166 aaPredicted RBP16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 PBX1P40424 430 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 BRD3Q15059 726 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 TOM1L2Q6ZVM7 507 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 NLRP10Q86W26 655 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 GRAMD1CQ8IYS0 662 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 TXLNBQ8N3L3 684 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 SEC31BQ9NQW1 1179 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 ZNF330Q9Y3S2 320 aaPredicted RBP16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 ADGRG1Q9Y653 693 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 SHANK3Q9BYB0 1731 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 MTF1Q14872 753 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 KARSQ15046 597 aaKnown RBP16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 SPATA1Q5VX52 437 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 CERS3Q8IU89 383 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 DNAJC5Q9H3Z4 198 aa16.93■□□□□ 0.3
SMARCA4-219ENST00000592604 DOCK2Q92608 1830 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 MFSD6Q6ZSS7 791 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 TMTC2Q8N394 836 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 STAG1Q8WVM7 1258 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 CSRNP2Q9H175 543 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 CCDC196A0A1B0GTZ2 297 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 GSG1L2A8MUP6 293 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 TEX33O43247 280 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 FGFR2P21802 821 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 NR5A1Q13285 461 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 USP49Q70CQ1 688 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 SRGAP1Q7Z6B7 1085 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 STRN4Q9NRL3 753 aa16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 AATFQ9NY61 560 aaKnown RBP eCLIP16.92■□□□□ 0.3
SMARCA4-219ENST00000592604 SOWAHDA6NJG2 315 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 MAP2K7O14733 419 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 MBD4O95243 580 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 IL2RBP14784 551 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 IRX5P78411 483 aaPredicted RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 TUBB2AQ13885 445 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 WTAPQ15007 396 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 SART3Q15020 963 aaKnown RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 RAD9BQ6WBX8 426 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 SH3RF1Q7Z6J0 888 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 HNRNPLLQ8WVV9 542 aaKnown RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 TUBB2BQ9BVA1 445 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 ZCCHC17Q9NP64 241 aaKnown RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 SEMA3EO15041 775 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 CUL4BQ13620 913 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 LONRF2Q1L5Z9 754 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 DNAJC10Q8IXB1 793 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 LPIN2Q92539 896 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 CCDC34Q96HJ3 373 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 IRX2Q9BZI1 471 aaPredicted RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 ADD3Q9UEY8 706 aaKnown RBP16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 ARAP2Q8WZ64 1704 aa16.91■□□□□ 0.3
SMARCA4-219ENST00000592604 ST5P78524 1137 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 RBL2Q08999 1139 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 MAP3K12Q12852 859 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 GPS2Q13227 327 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 HLFQ16534 295 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 MUM1L1Q5H9M0 696 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 CDKAL1Q5VV42 579 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 RASGRP2Q7LDG7 609 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 SPATA5Q8NB90 893 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 CDC23Q9UJX2 597 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 IRS4O14654 1257 aaPredicted RBP16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 FECHP22830 423 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 CHMP4BP1P59074 171 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 TUBB4BP68371 445 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 PUM3Q15397 648 aaKnown RBP16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 PPFIBP1Q86W92 1011 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 MAGEB6Q8N7X4 407 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 IGSF22Q8N9C0 903 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 OXER1Q8TDS5 423 aa16.9■□□□□ 0.3
SMARCA4-219ENST00000592604 CTAGE1Q96RT6 745 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms