RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 COL23A1Q86Y22 540 aaPredicted RBP13.05□□□□□ -0.32
LIG3-204ENST00000585740 CCAR1Q8IX12 1150 aaKnown RBP13.05□□□□□ -0.32
LIG3-204ENST00000585740 CCDC144CPQ8IYA2 1237 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 JMYQ8N9B5 988 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 LINC00301Q8NCQ3 95 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 FAM163AQ96GL9 167 aaPredicted RBP13.05□□□□□ -0.32
LIG3-204ENST00000585740 ZKSCAN3Q9BRR0 538 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 ZNF287Q9HBT7 754 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 ATP6V0A2Q9Y487 856 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 C6orf229H3BNL8 230 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 SPTLC2O15270 562 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 U2AF2P26368 475 aaKnown RBP eCLIP13.04□□□□□ -0.32
LIG3-204ENST00000585740 ME1P48163 572 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 CEBPZQ03701 1054 aaKnown RBP13.04□□□□□ -0.32
LIG3-204ENST00000585740 FAM160A1Q05DH4 1040 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 ANO1Q5XXA6 986 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 OTUD7BQ6GQQ9 843 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 CRACR2BQ8N4Y2 399 aaPredicted RBP13.04□□□□□ -0.32
LIG3-204ENST00000585740 ENAHQ8N8S7 591 aaPredicted RBP13.04□□□□□ -0.32
LIG3-204ENST00000585740 NUP133Q8WUM0 1156 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 MRPS27Q92552 414 aaKnown RBP13.04□□□□□ -0.32
LIG3-204ENST00000585740 PHKBQ93100 1093 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 MYL10Q9BUA6 226 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 COA1Q9GZY4 146 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 MCM9Q9NXL9 1143 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 FOCADQ5VW36 1801 aa13.04□□□□□ -0.32
LIG3-204ENST00000585740 MYH1P12882 1939 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 CYP2D7A0A087X1C5 515 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 GPR75-ASB3A0A0A6YYF3 556 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 KINO60870 393 aaKnown RBP13.03□□□□□ -0.32
LIG3-204ENST00000585740 PPFIA3O75145 1194 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 SRGNP10124 158 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 C12orf60Q5U649 245 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 SASS6Q6UVJ0 657 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 NBPF11Q86T75 865 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 STK11IPQ8N1F8 1099 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 FSIP1Q8NA03 581 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 RNF214Q8ND24 703 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 MASTLQ96GX5 879 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 EYA3Q99504 573 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 MAP3K14Q99558 947 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 FOXP1Q9H334 677 aaPredicted RBP13.03□□□□□ -0.32
LIG3-204ENST00000585740 POLLQ9UGP5 575 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 MKRN1Q9UHC7 482 aaKnown RBP13.03□□□□□ -0.32
LIG3-204ENST00000585740 CD2APQ9Y5K6 639 aa13.03□□□□□ -0.32
LIG3-204ENST00000585740 TSPY2A6NKD2 308 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 KIF28PB7ZC32 967 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 PRPF3O43395 683 aaKnown RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 PPP6R2O75170 966 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 NR1I2O75469 434 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 MMP1P03956 469 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 POLR3DP05423 398 aaPredicted RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 TYRO3Q06418 890 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 MPNDQ8N594 471 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 CTCFLQ8NI51 663 aaPredicted RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 SH3RF3Q8TEJ3 882 aaPredicted RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 ANKS1AQ92625 1134 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG3-204ENST00000585740 RTFDC1Q9BY42 306 aaPredicted RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 PCDHA7Q9UN72 937 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 JAG2Q9Y219 1238 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 CLIC4Q9Y696 253 aa13.02□□□□□ -0.33
LIG3-204ENST00000585740 COL11A2P13942 1736 aaPredicted RBP13.02□□□□□ -0.33
LIG3-204ENST00000585740 KIF3CO14782 793 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 KIF5BP33176 963 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 BTDP43251 543 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 APLP1P51693 650 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 SLC39A14Q15043 492 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 MFSD14BQ5SR56 506 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 DGKHQ86XP1 1220 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 ENGASEQ8NFI3 743 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 FAM200AQ8TCP9 573 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 AIFM3Q96NN9 605 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 GPR101Q96P66 508 aaPredicted RBP13.01□□□□□ -0.33
LIG3-204ENST00000585740 ZC3H12CQ9C0D7 883 aaKnown RBP13.01□□□□□ -0.33
LIG3-204ENST00000585740 TCP11L1Q9NUJ3 509 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 CCDC39Q9UFE4 941 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 GAKO14976 1311 aa13.01□□□□□ -0.33
LIG3-204ENST00000585740 DDX60LQ5H9U9 1706 aaKnown RBP13.01□□□□□ -0.33
LIG3-204ENST00000585740 PRDM1O75626 825 aa13□□□□□ -0.33
LIG3-204ENST00000585740 MMP10P09238 476 aa13□□□□□ -0.33
LIG3-204ENST00000585740 USP17L8P0C7I0 530 aa13□□□□□ -0.33
LIG3-204ENST00000585740 CYP2D6P10635 497 aa13□□□□□ -0.33
LIG3-204ENST00000585740 CMA1P23946 247 aa13□□□□□ -0.33
LIG3-204ENST00000585740 GNAQP50148 359 aa13□□□□□ -0.33
LIG3-204ENST00000585740 TROAPQ12815 778 aa13□□□□□ -0.33
LIG3-204ENST00000585740 CAMK4Q16566 473 aa13□□□□□ -0.33
LIG3-204ENST00000585740 RILPL1Q5EBL4 403 aa13□□□□□ -0.33
LIG3-204ENST00000585740 STYK1Q6J9G0 422 aa13□□□□□ -0.33
LIG3-204ENST00000585740 TMTC3Q6ZXV5 915 aa13□□□□□ -0.33
LIG3-204ENST00000585740 NOSTRINQ8IVI9 506 aa13□□□□□ -0.33
LIG3-204ENST00000585740 TEX11Q8IYF3 940 aa13□□□□□ -0.33
LIG3-204ENST00000585740 ZNF444Q8N0Y2 327 aaPredicted RBP13□□□□□ -0.33
LIG3-204ENST00000585740 FTOQ9C0B1 505 aaKnown RBP eCLIP13□□□□□ -0.33
LIG3-204ENST00000585740 MKNK2Q9HBH9 465 aa13□□□□□ -0.33
LIG3-204ENST00000585740 BRMS1Q9HCU9 246 aa13□□□□□ -0.33
LIG3-204ENST00000585740 CEP131Q9UPN4 1083 aa13□□□□□ -0.33
LIG3-204ENST00000585740 MORC2Q9Y6X9 1032 aaPredicted RBP13□□□□□ -0.33
LIG3-204ENST00000585740 ESPNB1AK53 854 aa12.99□□□□□ -0.33
LIG3-204ENST00000585740 CUTAO60888 179 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms