RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLN3-220ENST00000566040 NBPF3Q9H094 633 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 ATP8A2Q9NTI2 1148 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 MCM9Q9NXL9 1143 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 SAGE1Q9NXZ1 904 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 ZBTB21Q9ULJ3 1066 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 CSADQ9Y600 493 aa11.86□□□□□ -0.51
CLN3-220ENST00000566040 A0A0G2JLL6 359 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 MANSC4A6NHS7 340 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 LBX1P52954 281 aa11.85□□□□□ -0.51
CLN3-220ENST00000566040 SBK1Q52WX2 424 aa11.85□□□□□ -0.51
CLN3-220ENST00000566040 COL13A1Q5TAT6 717 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 CENPQQ7L2Z9 268 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 PRRT2Q7Z6L0 340 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 CLEC10AQ8IUN9 316 aa11.85□□□□□ -0.51
CLN3-220ENST00000566040 SIAH1Q8IUQ4 282 aa11.85□□□□□ -0.51
CLN3-220ENST00000566040 FOXP4Q8IVH2 680 aaPredicted RBP11.85□□□□□ -0.51
CLN3-220ENST00000566040 SERPINB13Q9UIV8 391 aa11.85□□□□□ -0.51
CLN3-220ENST00000566040 CCL15-CCL14A0A0B4J2E2 113 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 BTBD19C9JJ37 291 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 TRPA1O75762 1119 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 CCL15Q16663 113 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 GIMAP6Q6P9H5 292 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 POTEEQ6S8J3 1075 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 C16orf86Q6ZW13 317 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 IFNL3Q8IZI9 196 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 ZHX2Q9Y6X8 837 aa11.84□□□□□ -0.51
CLN3-220ENST00000566040 TBC1D8O95759 1140 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 GH2P01242 217 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 AKR1B1P15121 316 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 CRHR2Q13324 411 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 KIAA1755Q5JYT7 1200 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 TREML2Q5T2D2 321 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 TICAM2Q86XR7 235 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 HELLSQ9NRZ9 838 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.83□□□□□ -0.52
CLN3-220ENST00000566040 ZMYM6O95789 1325 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 CCDC171Q6TFL3 1326 aa11.83□□□□□ -0.52
CLN3-220ENST00000566040 BRCA2P51587 3418 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 IGKV6D-41A0A0C4DH26 115 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 A0A1W2PRG0 241 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 TRIM6-TRIM34B2RNG4 842 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 PATL2C9JE40 543 aaKnown RBP11.82□□□□□ -0.52
CLN3-220ENST00000566040 HLA-DOAP06340 250 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 RASA1P20936 1047 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 CDK8P49336 464 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 CTCFP49711 727 aaPredicted RBP11.82□□□□□ -0.52
CLN3-220ENST00000566040 GTF2A2P52657 109 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 SREBF2Q12772 1141 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 SH3D19Q5HYK7 790 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 TTC6Q86TZ1 520 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 REM2Q8IYK8 340 aaPredicted RBP11.82□□□□□ -0.52
CLN3-220ENST00000566040 ACER1Q8TDN7 264 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 RILPL2Q969X0 211 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 WDR18Q9BV38 432 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 INCENPQ9NQS7 918 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 PRDM10Q9NQV6 1147 aa11.82□□□□□ -0.52
CLN3-220ENST00000566040 ARPP21Q9UBL0 812 aaPredicted RBP11.82□□□□□ -0.52
CLN3-220ENST00000566040 PLIN4Q96Q06 1357 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 TRIM75PA6NK02 468 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 CXCL11O14625 94 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 CA12O43570 354 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 POLR3DP05423 398 aaPredicted RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 HSPD1P10809 573 aaKnown RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 CHMLP26374 656 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 CTGFP29279 349 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 SPP2Q13103 211 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 SNAPC2Q13487 334 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 SEPT2Q15019 361 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 ALX1Q15699 326 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 MCMDC2Q4G0Z9 681 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 NOM1Q5C9Z4 860 aaKnown RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 CRACR2BQ8N4Y2 399 aaPredicted RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 ZBTB47Q9UFB7 747 aaPredicted RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 RBBP6Q7Z6E9 1792 aaKnown RBP11.81□□□□□ -0.52
CLN3-220ENST00000566040 SMCHD1A6NHR9 2005 aa11.81□□□□□ -0.52
CLN3-220ENST00000566040 USP17L5A8MUK1 530 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 ASNSP08243 561 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 FGRP09769 529 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 CETPP11597 493 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 GNAT2P19087 354 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 HMGCS2P54868 508 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 INHBEP58166 350 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 CERKLQ49MI3 558 aaPredicted RBP11.8□□□□□ -0.52
CLN3-220ENST00000566040 ANKRD23Q86SG2 305 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 ZNF280CQ8ND82 737 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 PICK1Q9NRD5 415 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 EMILIN3Q9NT22 766 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 ANAPC4Q9UJX5 808 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 TAF6LQ9Y6J9 622 aa11.8□□□□□ -0.52
CLN3-220ENST00000566040 GPR25O00155 361 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 FGAP02671 866 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 PPARAQ07869 468 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 MTMR2Q13614 643 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 COL9A3Q14050 684 aaPredicted RBP11.79□□□□□ -0.52
CLN3-220ENST00000566040 ABCB5Q2M3G0 1257 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 CWC27Q6UX04 472 aaKnown RBP11.79□□□□□ -0.52
CLN3-220ENST00000566040 TBC1D10CQ8IV04 446 aa11.79□□□□□ -0.52
CLN3-220ENST00000566040 ZNF296Q8WUU4 475 aaPredicted RBP11.79□□□□□ -0.52
CLN3-220ENST00000566040 C12orf42Q96LP6 360 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms