RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 FKBP1BP68106 108 aa24.38■■□□□ 1.49
CLN3-212ENST00000564574 MAP3K11Q16584 847 aa24.38■■□□□ 1.49
CLN3-212ENST00000564574 RRP12Q5JTH9 1297 aaKnown RBP24.38■■□□□ 1.49
CLN3-212ENST00000564574 NEK1Q96PY6 1258 aa24.38■■□□□ 1.49
CLN3-212ENST00000564574 INCENPQ9NQS7 918 aa24.38■■□□□ 1.49
CLN3-212ENST00000564574 PHF20L1A8MW92 1017 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 USP2O75604 605 aaPredicted RBP24.37■■□□□ 1.49
CLN3-212ENST00000564574 SLURP2P0DP57 97 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 ADCK5Q3MIX3 580 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 ARMC9Q7Z3E5 817 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 KLRG1Q96E93 195 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 PLIN4Q96Q06 1357 aa24.37■■□□□ 1.49
CLN3-212ENST00000564574 PASKQ96RG2 1323 aa24.36■■□□□ 1.49
CLN3-212ENST00000564574 UNCXA6NJT0 531 aa24.36■■□□□ 1.49
CLN3-212ENST00000564574 B4E1Z4 1266 aa24.36■■□□□ 1.49
CLN3-212ENST00000564574 RANBP6O60518 1105 aaKnown RBP24.36■■□□□ 1.49
CLN3-212ENST00000564574 CTNND1O60716 968 aaKnown RBP24.36■■□□□ 1.49
CLN3-212ENST00000564574 APLP1P51693 650 aa24.36■■□□□ 1.49
CLN3-212ENST00000564574 MB21D2Q8IYB1 491 aaPredicted RBP24.36■■□□□ 1.49
CLN3-212ENST00000564574 JAKMIP1Q96N16 626 aaKnown RBP24.36■■□□□ 1.49
CLN3-212ENST00000564574 TSPY2A6NKD2 308 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 KDM4AO75164 1064 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 CELF2O95319 508 aaKnown RBP24.35■■□□□ 1.49
CLN3-212ENST00000564574 TSPY3P0CV98 308 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 TSPY8P0CW00 308 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 CAP2P40123 477 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 ABCB5Q2M3G0 1257 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.35■■□□□ 1.49
CLN3-212ENST00000564574 NEDD1Q8NHV4 660 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 WRNIP1Q96S55 665 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 ZNF408Q9H9D4 720 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 CABP5Q9NP86 173 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 ANGEL1Q9UNK9 670 aaKnown RBP24.35■■□□□ 1.49
CLN3-212ENST00000564574 WDR19Q8NEZ3 1342 aa24.35■■□□□ 1.49
CLN3-212ENST00000564574 AKR1B1P15121 316 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 MCM5P33992 734 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 MAP3K9P80192 1104 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 TFAP4Q01664 338 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 FMR1Q06787 632 aaKnown RBP eCLIP24.34■■□□□ 1.49
CLN3-212ENST00000564574 PRKG1Q13976 671 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 TTLL12Q14166 644 aaPredicted RBP24.34■■□□□ 1.49
CLN3-212ENST00000564574 NOL9Q5SY16 702 aaKnown RBP24.34■■□□□ 1.49
CLN3-212ENST00000564574 BLOC1S2Q6QNY1 142 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 MTA3Q9BTC8 594 aa24.34■■□□□ 1.49
CLN3-212ENST00000564574 GBA2Q9HCG7 927 aaPredicted RBP24.34■■□□□ 1.49
CLN3-212ENST00000564574 GDF11O95390 407 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 RRP1BQ14684 758 aaKnown RBP24.33■■□□□ 1.49
CLN3-212ENST00000564574 CCDC178Q5BJE1 867 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 PPP4R3BQ5MIZ7 849 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 TMEM179Q6ZVK1 233 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 DHX32Q7L7V1 743 aaKnown RBP24.33■■□□□ 1.49
CLN3-212ENST00000564574 C2orf69Q8N8R5 385 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 IL27Q8NEV9 243 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 ZSWIM6Q9HCJ5 1215 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 TCP11L1Q9NUJ3 509 aa24.33■■□□□ 1.49
CLN3-212ENST00000564574 MPHOSPH10O00566 681 aaKnown RBP24.32■■□□□ 1.48
CLN3-212ENST00000564574 ASNSP08243 561 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 CASTP20810 708 aaKnown RBP24.32■■□□□ 1.48
CLN3-212ENST00000564574 FAM47AQ5JRC9 791 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 IQCA1Q86XH1 822 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 ANKRD13AQ8IZ07 590 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 SCYL3Q8IZE3 742 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 ZSWIM5Q9P217 1185 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 CYP46A1Q9Y6A2 500 aa24.32■■□□□ 1.48
CLN3-212ENST00000564574 INPP5BP32019 993 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 RUFY3Q7L099 469 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 KIF2CQ99661 725 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 ZBTB21Q9ULJ3 1066 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 FZD1Q9UP38 647 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 CSADQ9Y600 493 aa24.31■■□□□ 1.48
CLN3-212ENST00000564574 IGKV6D-41A0A0C4DH26 115 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 GH2P01242 217 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 RPS6KB1P23443 525 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 EXOSC10Q01780 885 aaKnown RBP24.3■■□□□ 1.48
CLN3-212ENST00000564574 SART3Q15020 963 aaKnown RBP24.3■■□□□ 1.48
CLN3-212ENST00000564574 RABEP1Q15276 862 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 LDLRAD1Q5T700 205 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 CST9Q5W186 159 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 CYB5R4Q7L1T6 521 aa24.3■■□□□ 1.48
CLN3-212ENST00000564574 MYH4Q9Y623 1939 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 PRC1O43663 620 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 ANTXR2P58335 489 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.29■■□□□ 1.48
CLN3-212ENST00000564574 NKX2-3Q8TAU0 364 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 TMEM87BQ96K49 555 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 UBAC1Q9BSL1 405 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.29■■□□□ 1.48
CLN3-212ENST00000564574 KANSL2Q9H9L4 492 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 PICK1Q9NRD5 415 aa24.29■■□□□ 1.48
CLN3-212ENST00000564574 PHIPQ8WWQ0 1821 aa24.28■■□□□ 1.48
CLN3-212ENST00000564574 ERICH2A1L162 156 aa24.28■■□□□ 1.48
CLN3-212ENST00000564574 ZKSCAN4Q969J2 545 aaPredicted RBP24.28■■□□□ 1.48
CLN3-212ENST00000564574 ZSCAN10Q96SZ4 725 aaPredicted RBP24.28■■□□□ 1.48
CLN3-212ENST00000564574 TBC1D2Q9BYX2 928 aa24.28■■□□□ 1.48
CLN3-212ENST00000564574 GUCY1A2P33402 732 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 JAG1P78504 1218 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 VGLL4Q14135 290 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 SEPT2Q15019 361 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 MOB2Q70IA6 237 aa24.27■■□□□ 1.48
CLN3-212ENST00000564574 DGKHQ86XP1 1220 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms