RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 PPANQ9NQ55 473 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 SAMSN1Q9NSI8 373 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 RBM28Q9NW13 759 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ZNF532Q9HCE3 1301 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 PPLO60437 1756 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 KIF5BP33176 963 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 RBM5P52756 815 aaKnown RBP eCLIP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 PDE4DQ08499 809 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 NECTIN1Q15223 517 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 TTC38Q5R3I4 469 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 NBPF14Q5TI25 921 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 MEX3CQ5U5Q3 659 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 SARM1Q6SZW1 724 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ANKS4BQ8N8V4 417 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ESR2Q92731 530 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 MYCBPQ99417 103 aaPredicted RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ANKIB1Q9P2G1 1089 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ZPR1O75312 459 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 EZRP15311 586 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ACTN2P35609 894 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 NAPAP54920 295 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 SPAG1Q07617 926 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 CPLX4Q7Z7G2 160 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ANKLE2Q86XL3 938 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 SAP30BPQ9UHR5 308 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ANGEL1Q9UNK9 670 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 FRMPD1Q5SYB0 1578 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ITGA6P23229 1130 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ADORA1P30542 326 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 MAP2K2P36507 400 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 ETF1P62495 437 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 TUBB4BP68371 445 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 RBM6P78332 1123 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 MRPS25P82663 173 aaKnown RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 KCTD16Q68DU8 428 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 CC2D1AQ6P1N0 951 aaPredicted RBP5.59□□□□□ -1.51
SYNE2-223ENST00000557005 TMTC1Q8IUR5 882 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 PLBD2Q8NHP8 589 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 SLC52A2Q9HAB3 445 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 TBC1D7Q9P0N9 293 aa5.59□□□□□ -1.51
SYNE2-223ENST00000557005 COL3A1P02461 1466 aaPredicted RBP5.59□□□□□ -1.52
SYNE2-223ENST00000557005 KIF28PB7ZC32 967 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 CTIFO43310 598 aaKnown RBP5.59□□□□□ -1.52
SYNE2-223ENST00000557005 SRGAP2O75044 1071 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 CYP21A2P08686 494 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 ASIC2Q16515 512 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 VPS36Q86VN1 386 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 IFT20Q8IY31 132 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 CABLES1Q8TDN4 633 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 RSRC1Q96IZ7 334 aaKnown RBP5.59□□□□□ -1.52
SYNE2-223ENST00000557005 GJB4Q9NTQ9 266 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 RASAL2Q9UJF2 1139 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 V9GY48 417 aaPredicted RBP5.59□□□□□ -1.52
SYNE2-223ENST00000557005 MED23Q9ULK4 1368 aa5.59□□□□□ -1.52
SYNE2-223ENST00000557005 HGSO14964 777 aaPredicted RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 PDE4BQ07343 736 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 SAR1BQ9Y6B6 198 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 ARHGEF28Q8N1W1 1705 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 MOCS3O95396 460 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 IFI16Q16666 785 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 TMEM132AQ24JP5 1023 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 CDC42BPGQ6DT37 1551 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 ZNF790Q6PG37 636 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC155Q8N6L0 562 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 RABGGTAQ92696 567 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 TRIM31Q9BZY9 425 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 KCNK9Q9NPC2 374 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 YEATS2Q9ULM3 1422 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 A0A1W2PRG0 241 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 EYA2O00167 538 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 BMP15O95972 392 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 SLC7A5Q01650 507 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 FCHSD1Q86WN1 690 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC25Q86WR0 208 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 LRRN4CLQ8ND94 238 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 TBC1D31Q96DN5 1066 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 CRNKL1Q9BZJ0 848 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 ZCCHC17Q9NP64 241 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 BABAM1Q9NWV8 329 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 DBNLQ9UJU6 430 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 ABCA9Q8IUA7 1624 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 B4DLN1 442 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 GJC1P36383 396 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 RAPGEF1Q13905 1077 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 RILPL1Q5EBL4 403 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 DTHD1Q6ZMT9 781 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 LINC00301Q8NCQ3 95 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 AIFM3Q96NN9 605 aa5.58□□□□□ -1.52
SYNE2-223ENST00000557005 LSM14BQ9BX40 385 aaKnown RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 GPHNQ9NQX3 736 aaPredicted RBP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 DDX21Q9NR30 783 aaKnown RBP eCLIP5.58□□□□□ -1.52
SYNE2-223ENST00000557005 GSTTP1A0A1W2PQM5 241 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 IRS4O14654 1257 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PPP6R2O75170 966 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TNNC1P63316 161 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PLS1Q14651 629 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 DCAF17Q5H9S7 520 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 NOSTRINQ8IVI9 506 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms