RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 CNNM3Q8NE01 707 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 SYTL4Q96C24 671 aaPredicted RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 ERO1AQ96HE7 468 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 CCDC34Q96HJ3 373 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 PKNOX2Q96KN3 472 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 MAP3K14Q99558 947 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.04□□□□□ -1.12
TDP1-213ENST00000555880 RNF41Q9H4P4 317 aaPredicted RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 DACH1Q9UI36 760 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 KCNH3Q9ULD8 1083 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 LHX6Q9UPM6 363 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 CEP131Q9UPN4 1083 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ZBTB1Q9Y2K1 713 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ROBO1Q9Y6N7 1651 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 MYH6P13533 1939 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 NID2Q14112 1375 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 SLU7O95391 586 aaKnown RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 IFNAR1P17181 557 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 FGFR2P21802 821 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 UBASH3AP57075 661 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 CTDSPL2Q05D32 466 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 PNOCQ13519 176 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 RASGRF1Q13972 1273 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 DSG2Q14126 1118 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 NCAPHQ15003 741 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 WTAPQ15007 396 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 NTRK3Q16288 839 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 RTN1Q16799 776 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 CFAP100Q494V2 611 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 RILPL1Q5EBL4 403 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 RRP12Q5JTH9 1297 aaKnown RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 ISM2Q6H9L7 571 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ARMCX5Q6P1M9 558 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 KRBA2Q6ZNG9 492 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 HOMER1Q86YM7 354 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ZNF397Q8NF99 534 aaPredicted RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 HELBQ8NG08 1087 aaPredicted RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 PPP1R13BQ96KQ4 1090 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 MTA3Q9BTC8 594 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 MYL10Q9BUA6 226 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ARMT1Q9H993 441 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 OGFRQ9NZT2 677 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 ZSWIM5Q9P217 1185 aa8.04□□□□□ -1.12
TDP1-213ENST00000555880 THRAP3Q9Y2W1 955 aaKnown RBP8.04□□□□□ -1.12
TDP1-213ENST00000555880 UBAP1LF5GYI3 381 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 RANBP6O60518 1105 aaKnown RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 DEXIO95424 95 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 MMP1P03956 469 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 IGHMBP2P38935 993 aaKnown RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 RCAN1P53805 252 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 FOXK1P85037 733 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 CCDC152Q4G0S7 254 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 PLPP6Q8IY26 295 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 ELOA2Q8IYF1 753 aaPredicted RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 ZNF34Q8IZ26 560 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 STAG1Q8WVM7 1258 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 UBAC1Q9BSL1 405 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 FOXP1Q9H334 677 aaPredicted RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 SENP2Q9HC62 589 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 EPB41L4AQ9HCS5 686 aaPredicted RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 PRDM10Q9NQV6 1147 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 ZNF215Q9UL58 517 aaPredicted RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 DENND2AQ9ULE3 1009 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 SLC4A4Q9Y6R1 1079 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 COL14A1Q05707 1796 aaKnown RBP8.03□□□□□ -1.12
TDP1-213ENST00000555880 LTBP4Q8N2S1 1624 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 PNPLA7Q6ZV29 1317 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 PLCH1Q4KWH8 1693 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 RTL9Q8NET4 1388 aa8.03□□□□□ -1.12
TDP1-213ENST00000555880 A0A0G2JS52 829 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 ZSCAN12O43309 604 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 TOP1P11387 765 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 XBP1P17861 261 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 AKAP17AQ02040 695 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 DMTNQ08495 405 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 DDB1Q16531 1140 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 UTP14CQ5TAP6 766 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 E4F1Q66K89 784 aaPredicted RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 KANK3Q6NY19 840 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 DIS3L2Q8IYB7 885 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 CLIC6Q96NY7 704 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 UTP14AQ9BVJ6 771 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 GTPBP4Q9BZE4 634 aaKnown RBP8.02□□□□□ -1.12
TDP1-213ENST00000555880 LRP2BPQ9P2M1 347 aa8.02□□□□□ -1.12
TDP1-213ENST00000555880 BCORQ6W2J9 1755 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 GSG1L2A8MUP6 293 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 ATP1A3P13637 1013 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 POSTNQ15063 836 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 PPP2R5BQ15173 497 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 LONRF3Q496Y0 759 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 PARP10Q53GL7 1025 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 METTL16Q86W50 562 aaKnown RBP8.02□□□□□ -1.13
TDP1-213ENST00000555880 FCHSD1Q86WN1 690 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 VSTM4Q8IW00 320 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 SMARCE1Q969G3 411 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 FAM217BQ9NTX9 383 aaPredicted RBP8.02□□□□□ -1.13
TDP1-213ENST00000555880 LAMB2P55268 1798 aa8.02□□□□□ -1.13
TDP1-213ENST00000555880 DISP2A7MBM2 1401 aa8.01□□□□□ -1.13
TDP1-213ENST00000555880 PHLPP1O60346 1717 aa8.01□□□□□ -1.13
TDP1-213ENST00000555880 DOT1LQ8TEK3 1739 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms