RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ITGB4P16144 1822 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 A0A1B0GTH6 734 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 ACTN4O43707 911 aaKnown RBP15.68■□□□□ 0.1
VPS33A-208ENST00000543633 RXRAP19793 462 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 TOB1P50616 345 aaPredicted RBP15.68■□□□□ 0.1
VPS33A-208ENST00000543633 WWC3Q9ULE0 1092 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 NPHP1O15259 732 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 PDE8AO60658 829 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 BMP15O95972 392 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 PPP2R3AQ06190 1150 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 MAP3K12Q12852 859 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 ZSWIM5Q9P217 1185 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 BCL9LQ86UU0 1499 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA31A6Q5VVP1 1343 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 CDK11BP21127 795 aaKnown RBP15.67■□□□□ 0.1
VPS33A-208ENST00000543633 PHKA1P46020 1223 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 GNG11P61952 73 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 NR1I3Q14994 352 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 CC2D1AQ6P1N0 951 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-208ENST00000543633 MFSD6Q6ZSS7 791 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 NKX2-3Q8TAU0 364 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 GOLGA1Q92805 767 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 SYTL4Q96C24 671 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-208ENST00000543633 NACAP1Q9BZK3 213 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 RNF41Q9H4P4 317 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-208ENST00000543633 AATFQ9NY61 560 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS33A-208ENST00000543633 SERTAD1Q9UHV2 236 aa15.67■□□□□ 0.1
VPS33A-208ENST00000543633 LAMB2P55268 1798 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 DLEC1Q9Y238 1755 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA31A5Q5VU36 1347 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA31A7Q8IWB4 1347 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 BTBD18B2RXH4 712 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 POTEB2H3BUK9 544 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 POLR2DO15514 142 aaKnown RBP15.66■□□□□ 0.1
VPS33A-208ENST00000543633 CCDC175P0C221 793 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 SLC5A1P13866 664 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 HSPA1LP34931 641 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 FMR1Q06787 632 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS33A-208ENST00000543633 WTAPQ15007 396 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 CTAGE1Q96RT6 745 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 THRAP3Q9Y2W1 955 aaKnown RBP15.66■□□□□ 0.1
VPS33A-208ENST00000543633 RTL9Q8NET4 1388 aa15.66■□□□□ 0.1
VPS33A-208ENST00000543633 ERICH2A1L162 156 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 AKR1B15C9JRZ8 316 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 IRS4O14654 1257 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 FOXN1O15353 648 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 FECHP22830 423 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 CRACR2BQ8N4Y2 399 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 MSL3Q8N5Y2 521 aaKnown RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 CCDC51Q96ER9 411 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 MYH2Q9UKX2 1941 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 MBD4O95243 580 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 PRR29P0C7W0 189 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 BRD3Q15059 726 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA1Q5VX52 437 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 DNAJC10Q8IXB1 793 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 PDILTQ8N807 584 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA5Q8NB90 893 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 CCDC85AQ96PX6 553 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 WDR24Q96S15 920 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 MYL10Q9BUA6 226 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 RNF26Q9BY78 433 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 ARFGAP3Q9NP61 516 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 ST7Q9NRC1 585 aa15.65■□□□□ 0.1
VPS33A-208ENST00000543633 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-208ENST00000543633 ITIH6Q6UXX5 1313 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 CCDC151A5D8V7 595 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 GSG1L2A8MUP6 293 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 ERVV-1B6SEH8 477 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 TBC1D8O95759 1140 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 XBP1P17861 261 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 TOGARAM2Q6ZUX3 1019 aa15.64■□□□□ 0.09
VPS33A-208ENST00000543633 FNBP4Q8N3X1 1017 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-208ENST00000543633 PBX1P40424 430 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 GOLGA8FQ08AF8 430 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 GOLGA8DPQ0D2H9 430 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 SH3RF1Q7Z6J0 888 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 TXLNBQ8N3L3 684 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 FERMT2Q96AC1 680 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 SYNRGQ9UMZ2 1314 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 RREB1Q92766 1687 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 TXLNAP40222 546 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 CTDSPL2Q05D32 466 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 CDKAL1Q5VV42 579 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 APTXQ7Z2E3 356 aaKnown RBP15.63■□□□□ 0.09
VPS33A-208ENST00000543633 GSDMAQ96QA5 445 aa15.63■□□□□ 0.09
VPS33A-208ENST00000543633 TRIM75PA6NK02 468 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 GUCY1A2P33402 732 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 CUL4BQ13620 913 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 BARGINQ6ZT62 677 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 PPFIBP1Q86W92 1011 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 ZNF654Q8IZM8 581 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 MAGEB6Q8N7X4 407 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 CEP112Q8N8E3 955 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 HNRNPLLQ8WVV9 542 aaKnown RBP15.62■□□□□ 0.09
VPS33A-208ENST00000543633 C8orf37Q96NL8 207 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 PYM1Q9BRP8 204 aaKnown RBP15.62■□□□□ 0.09
VPS33A-208ENST00000543633 CDCA7Q9BWT1 371 aaPredicted RBP15.62■□□□□ 0.09
VPS33A-208ENST00000543633 ANAPC4Q9UJX5 808 aa15.62■□□□□ 0.09
VPS33A-208ENST00000543633 PCDHB6Q9Y5E3 794 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms