RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 MAP3K15Q6ZN16 1313 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 KINO60870 393 aaKnown RBP10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 TXNRD1Q16881 649 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 AMIGO3Q86WK7 504 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 TMEM139Q8IV31 216 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 PARD3BQ8TEW8 1205 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 VIPAS39Q9H9C1 493 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 DDX20Q9UHI6 824 aaKnown RBP10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 SAMM50Q9Y512 469 aa10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 ATXN2Q99700 1313 aaKnown RBP10.75□□□□□ -0.69
CTNNA1-243ENST00000540387 PLSCR1O15162 318 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 GNPATO15228 680 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 FANCCQ00597 558 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 DPCR1Q3MIW9 517 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CEP85LQ5SZL2 805 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 RC3H1Q5TC82 1133 aaKnown RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 RIN2Q8WYP3 895 aaPredicted RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CYP46A1Q9Y6A2 500 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CNTNAP4Q9C0A0 1308 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 PXDNLA1KZ92 1463 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 MYH14Q7Z406 1995 aaKnown RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 KIAA0754O94854 1291 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 SNUPNO95149 360 aaKnown RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 MAP4K4O95819 1239 aaPredicted RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 GNAI2P04899 355 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 UBTFL1P0CB47 393 aaPredicted RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 TCIRG1Q13488 830 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 GCKRQ14397 625 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 NAA25Q14CX7 972 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 RBBP5Q15291 538 aaKnown RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 TLDC1Q6P9B6 456 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 GIGYF2Q6Y7W6 1299 aaKnown RBP10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CCDC73Q6ZRK6 1079 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CEP57Q86XR8 500 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 ZSWIM6Q9HCJ5 1215 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 CDC23Q9UJX2 597 aa10.74□□□□□ -0.69
CTNNA1-243ENST00000540387 ANKRD18BA2A2Z9 1011 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 RPS6KA4O75676 772 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 RPS6KA3P51812 740 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 CEBPZQ03701 1054 aaKnown RBP10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 KARSQ15046 597 aaKnown RBP10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 SLC27A3Q5K4L6 730 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 FAM76AQ8TAV0 307 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 BPIFA3Q9BQP9 254 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 GRM8O00222 908 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 EIF3HO15372 352 aaKnown RBP eCLIP10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 RESTQ13127 1097 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 TOGARAM2Q6ZUX3 1019 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 ENGASEQ8NFI3 743 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 PAIP2Q9BPZ3 127 aaKnown RBP10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 IRX2Q9BZI1 471 aaPredicted RBP10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 CENPHQ9H3R5 247 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 GRIN2DO15399 1336 aa10.73□□□□□ -0.69
CTNNA1-243ENST00000540387 ERVV-1B6SEH8 477 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 MEFVO15553 781 aaPredicted RBP10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 ZNF202O95125 648 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 LMOD1P29536 600 aaPredicted RBP10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 SMTNP53814 917 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 TUBB4BP68371 445 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 PSMD2Q13200 908 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 SNX1Q13596 522 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 NCAPHQ15003 741 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 ZBTB10Q96DT7 871 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 ISCA1Q9BUE6 129 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 CFAP45Q9UL16 551 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 HPCAL4Q9UM19 191 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 RTCBQ9Y3I0 505 aaKnown RBP10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 ZC3H4Q9UPT8 1303 aaKnown RBP10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 A0A087WZG4 1122 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 RASSF9O75901 435 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 CAMTA2O94983 1202 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 ATP1A3P13637 1013 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 PEX19P40855 299 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 FAM160A1Q05DH4 1040 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 PPFIA1Q13136 1202 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 KIF4BQ2VIQ3 1234 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 B4GALNT4Q76KP1 1039 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 DPF2Q92785 391 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 CAPS2Q9BXY5 557 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 TM6SF1Q9BZW5 370 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 COL15A1P39059 1388 aa10.72□□□□□ -0.69
CTNNA1-243ENST00000540387 TUBBP07437 444 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 CCDC40Q4G0X9 1142 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 CDCA2Q69YH5 1023 aaPredicted RBP10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 COQ9O75208 318 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 EZRP15311 586 aaKnown RBP10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 PECAM1P16284 738 aaPredicted RBP10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 ARHGAP25P42331 645 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 GNGT1P63211 74 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 EN1Q05925 392 aaPredicted RBP10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 PTPN21Q16825 1174 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 TBC1D25Q3MII6 688 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 UBE3BQ7Z3V4 1068 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 ARHGEF1Q92888 912 aaKnown RBP10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 SPDL1Q96EA4 605 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 KAZALD1Q96I82 304 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 PSMD1Q99460 953 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 PRDM16Q9HAZ2 1276 aa10.71□□□□□ -0.69
CTNNA1-243ENST00000540387 CWC25Q9NXE8 425 aaPredicted RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms