RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLN6-202ENST00000538696 NKX2-3Q8TAU0 364 aa20.36■□□□□ 0.85
CLN6-202ENST00000538696 KLRG1Q96E93 195 aa20.36■□□□□ 0.85
CLN6-202ENST00000538696 ANGEL1Q9UNK9 670 aaKnown RBP20.36■□□□□ 0.85
CLN6-202ENST00000538696 E7EWF7 191 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 PPP1R12BO60237 982 aaPredicted RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 PCP11498 1178 aaKnown RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 ZKSCAN1P17029 563 aaPredicted RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 INPP5BP32019 993 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 NEK4P51957 841 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 TTLL12Q14166 644 aaPredicted RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 MAP3K11Q16584 847 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 MFSD6Q6ZSS7 791 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 JAKMIP1Q96N16 626 aaKnown RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 WRNIP1Q96S55 665 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 RNF41Q9H4P4 317 aaPredicted RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 MKNK2Q9HBH9 465 aa20.35■□□□□ 0.85
CLN6-202ENST00000538696 GBA2Q9HCG7 927 aaPredicted RBP20.35■□□□□ 0.85
CLN6-202ENST00000538696 K7ELQ4 463 aaPredicted RBP20.34■□□□□ 0.85
CLN6-202ENST00000538696 ST18O60284 1047 aa20.34■□□□□ 0.85
CLN6-202ENST00000538696 GDF11O95390 407 aa20.34■□□□□ 0.85
CLN6-202ENST00000538696 AKR1B1P15121 316 aa20.34■□□□□ 0.85
CLN6-202ENST00000538696 SHROOM1Q2M3G4 852 aaPredicted RBP20.34■□□□□ 0.85
CLN6-202ENST00000538696 TSGA10IPQ3SY00 556 aa20.34■□□□□ 0.85
CLN6-202ENST00000538696 ARMC9Q7Z3E5 817 aa20.34■□□□□ 0.85
CLN6-202ENST00000538696 CPA1P15085 419 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 IREB2P48200 963 aaKnown RBP20.33■□□□□ 0.85
CLN6-202ENST00000538696 FKBP1BP68106 108 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 JAG1P78504 1218 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 CERKLQ49MI3 558 aaPredicted RBP20.33■□□□□ 0.85
CLN6-202ENST00000538696 RRP12Q5JTH9 1297 aaKnown RBP20.33■□□□□ 0.85
CLN6-202ENST00000538696 TM6SF1Q9BZW5 370 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 ZNF287Q9HBT7 754 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 TOMM22Q9NS69 142 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 MYH4Q9Y623 1939 aa20.33■□□□□ 0.85
CLN6-202ENST00000538696 PLIN4Q96Q06 1357 aa20.33■□□□□ 0.84
CLN6-202ENST00000538696 B4E1Z4 1266 aa20.32■□□□□ 0.84
CLN6-202ENST00000538696 UBE2Q2LH0YL09 131 aa20.32■□□□□ 0.84
CLN6-202ENST00000538696 CASTP20810 708 aaKnown RBP20.32■□□□□ 0.84
CLN6-202ENST00000538696 CAP2P40123 477 aa20.32■□□□□ 0.84
CLN6-202ENST00000538696 NOL9Q5SY16 702 aaKnown RBP20.32■□□□□ 0.84
CLN6-202ENST00000538696 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.32■□□□□ 0.84
CLN6-202ENST00000538696 ZSWIM6Q9HCJ5 1215 aa20.32■□□□□ 0.84
CLN6-202ENST00000538696 CTNND1O60716 968 aaKnown RBP20.31■□□□□ 0.84
CLN6-202ENST00000538696 MAP3K9P80192 1104 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 COL9A3Q14050 684 aaPredicted RBP20.31■□□□□ 0.84
CLN6-202ENST00000538696 FAM47AQ5JRC9 791 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 C2orf69Q8N8R5 385 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 ZKSCAN4Q969J2 545 aaPredicted RBP20.31■□□□□ 0.84
CLN6-202ENST00000538696 TTC14Q96N46 770 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 KRT23Q9C075 422 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 CNNM2Q9H8M5 875 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.31■□□□□ 0.84
CLN6-202ENST00000538696 ZBTB21Q9ULJ3 1066 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 PTPRFP10586 1907 aa20.31■□□□□ 0.84
CLN6-202ENST00000538696 RANBP6O60518 1105 aaKnown RBP20.3■□□□□ 0.84
CLN6-202ENST00000538696 GUCY1A2P33402 732 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 VGLL4Q14135 290 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 KRT32Q14532 448 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 ABCB5Q2M3G0 1257 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 LDLRAD1Q5T700 205 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 MB21D2Q8IYB1 491 aaPredicted RBP20.3■□□□□ 0.84
CLN6-202ENST00000538696 SCYL3Q8IZE3 742 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 ZNF444Q8N0Y2 327 aaPredicted RBP20.3■□□□□ 0.84
CLN6-202ENST00000538696 NCOA7Q8NI08 942 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 CCDC17Q96LX7 622 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN6-202ENST00000538696 SNCAIPQ9Y6H5 919 aa20.3■□□□□ 0.84
CLN6-202ENST00000538696 KDM4AO75164 1064 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 GH2P01242 217 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 PSMA5P28066 241 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 TFAP4Q01664 338 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 TRDNQ13061 729 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 ANKRD13AQ8IZ07 590 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 SPRYD3Q8NCJ5 442 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 NEDD1Q8NHV4 660 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 ESR2Q92731 530 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 CLMNQ96JQ2 1002 aa20.29■□□□□ 0.84
CLN6-202ENST00000538696 TSPY2A6NKD2 308 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 TMEM88BA6NKF7 163 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 MPHOSPH10O00566 681 aaKnown RBP20.28■□□□□ 0.84
CLN6-202ENST00000538696 TSPY3P0CV98 308 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 TSPY8P0CW00 308 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 NT5C2P49902 561 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 TMEM179Q6ZVK1 233 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 NOL8Q76FK4 1167 aaKnown RBP20.28■□□□□ 0.84
CLN6-202ENST00000538696 CYB5R4Q7L1T6 521 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 RALYLQ86SE5 291 aaKnown RBP20.28■□□□□ 0.84
CLN6-202ENST00000538696 CSADQ9Y600 493 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 CYP46A1Q9Y6A2 500 aa20.28■□□□□ 0.84
CLN6-202ENST00000538696 IGKV6D-41A0A0C4DH26 115 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 ANTXR2P58335 489 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 SEPT2Q15019 361 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 BLOC1S2Q6QNY1 142 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 RUFY3Q7L099 469 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 CCDC84Q86UT8 332 aaPredicted RBP20.27■□□□□ 0.84
CLN6-202ENST00000538696 CLEC10AQ8IUN9 316 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 NEK1Q96PY6 1258 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 ELP3Q9H9T3 547 aa20.27■□□□□ 0.84
CLN6-202ENST00000538696 CABP5Q9NP86 173 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms