RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 RUFY2Q8WXA3 655 aa12.07□□□□□ -0.48
RTN3-208ENST00000537981 SAMSN1Q9NSI8 373 aaKnown RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 SPATS2LQ9NUQ6 558 aaKnown RBP12.07□□□□□ -0.48
RTN3-208ENST00000537981 DNM1LO00429 736 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 BACH1O14867 736 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 CBFA2T2O43439 604 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 ATP2C2O75185 946 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 CALRP27797 417 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 LTKP29376 864 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 NAP1L1P55209 391 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 RBL2Q08999 1139 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 STK38Q15208 465 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 SF3A1Q15459 793 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 SND1Q7KZF4 910 aaKnown RBP eCLIP12.06□□□□□ -0.481e-9■■■■□ 22.5
RTN3-208ENST00000537981 PARP9Q8IXQ6 854 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 TSEN2Q8NCE0 465 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 SLC39A2Q9NP94 309 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 CPSF2Q9P2I0 782 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 LAMA4Q16363 1823 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 NUTM2FA1L443 756 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 RNF225M0QZC1 329 aaPredicted RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 ZNF185O15231 689 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 ANKRD1Q15327 319 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 SNCBQ16143 134 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 NUTM2GQ5VZR2 741 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 FUKQ8N0W3 1084 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 C3orf20Q8ND61 904 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 SREK1Q8WXA9 508 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 NAPGQ99747 312 aaPredicted RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 PHAXQ9H814 394 aaKnown RBP12.06□□□□□ -0.48
RTN3-208ENST00000537981 MYO6Q9UM54 1294 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 ADGRB3O60242 1522 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 A2ML1A8K2U0 1454 aa12.06□□□□□ -0.48
RTN3-208ENST00000537981 GLRX3O76003 335 aaKnown RBP12.05□□□□□ -0.48
RTN3-208ENST00000537981 CDC25AP30304 524 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 GBP2P32456 591 aaPredicted RBP12.05□□□□□ -0.48
RTN3-208ENST00000537981 ARHGAP25P42331 645 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 RPS6KA3P51812 740 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 STOX1Q6ZVD7 989 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 TXNDC2Q86VQ3 553 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 NBPF5PQ86XG9 351 aaPredicted RBP12.05□□□□□ -0.48
RTN3-208ENST00000537981 RAB11FIP4Q86YS3 637 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 SH3GL3Q99963 347 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 A0A1B0GUA9 196 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 TTC36A6NLP5 189 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 KIF28PB7ZC32 967 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 TTLL7Q6ZT98 887 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 ARHGEF25Q86VW2 580 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 METTL16Q86W50 562 aaKnown RBP12.05□□□□□ -0.48
RTN3-208ENST00000537981 STAMBPL1Q96FJ0 436 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 RNPC3Q96LT9 517 aaKnown RBP12.05□□□□□ -0.48
RTN3-208ENST00000537981 TSPYL4Q9UJ04 414 aa12.05□□□□□ -0.48
RTN3-208ENST00000537981 CRB1P82279 1406 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 PDE2AO00408 941 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 COBLO75128 1261 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 KRT14P02533 472 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 ATP1A1P05023 1023 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 FDPSP14324 419 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 SSR1P43307 286 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 RAB27AP51159 221 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 KCNA1Q09470 495 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 CCDC148Q8NFR7 591 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 ZNF473Q8WTR7 871 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 ARHGEF1Q92888 912 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 ZNF396Q96N95 335 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 GPHNQ9NQX3 736 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 NFE2L3Q9Y4A8 694 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 RBM47A0AV96 593 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 SPTLC2O15270 562 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 SNUPNO95149 360 aaKnown RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 KCTD19Q17RG1 926 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 SPECC1Q5M775 1068 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 NAA16Q6N069 864 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 PIK3R5Q8WYR1 880 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 YIPF3Q9GZM5 350 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 CCDC8Q9H0W5 538 aaPredicted RBP12.04□□□□□ -0.48
RTN3-208ENST00000537981 BOLA2Q9H3K6 86 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 TUBE1Q9UJT0 475 aa12.04□□□□□ -0.48
RTN3-208ENST00000537981 A0A1W2PQ27 194 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 A0A1W2PQ64 194 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 A0A1W2PQD8 194 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 MAP3K13O43283 966 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 FAM163BP0C2L3 166 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 ERVK-24P63145 666 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 C2orf54Q08AI8 447 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 SF3A3Q12874 501 aaKnown RBP eCLIP12.03□□□□□ -0.48
RTN3-208ENST00000537981 USP4Q13107 963 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 SKIV2LQ15477 1246 aaKnown RBP12.03□□□□□ -0.48
RTN3-208ENST00000537981 WHAMMP3Q1A5X7 153 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 ANKLE2Q86XL3 938 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 NME8Q8N427 588 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 NEK1Q96PY6 1258 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 OSBPL7Q9BZF2 842 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 C19orf44Q9H6X5 657 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 PIK3C2BO00750 1634 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 A0A1B0GVG6 124 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 ARID4AP29374 1257 aaPredicted RBP12.03□□□□□ -0.48
RTN3-208ENST00000537981 LSP1P33241 339 aa12.03□□□□□ -0.48
RTN3-208ENST00000537981 FXR1P51114 621 aaKnown RBP eCLIP12.03□□□□□ -0.48
RTN3-208ENST00000537981 HSP90AB2PQ58FF8 381 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms