RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PATL2C9JE40 543 aaKnown RBP15.59■□□□□ 0.09
VPS28-216ENST00000533806 ASNSP08243 561 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 GNAT2P19087 354 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 SBK1Q52WX2 424 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 ANKRD23Q86SG2 305 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 TBC1D2Q9BYX2 928 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 CYP2D7A0A087X1C5 515 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 GPR25O00155 361 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 GDF11O95390 407 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 CRHR2Q13324 411 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 ZNF280CQ8ND82 737 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 TRIM34Q9BYJ4 488 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 ZBTB21Q9ULJ3 1066 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 DOCK1Q14185 1865 aa15.58■□□□□ 0.08
VPS28-216ENST00000533806 PHIPQ8WWQ0 1821 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 MYH1P12882 1939 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 TRIM75PA6NK02 468 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 GH2P01242 217 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 GUCY1A2P33402 732 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 SPP2Q13103 211 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 CERKLQ49MI3 558 aaPredicted RBP15.57■□□□□ 0.08
VPS28-216ENST00000533806 SH3D19Q5HYK7 790 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 SLC44A5Q8NCS7 719 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 ZNF296Q8WUU4 475 aaPredicted RBP15.57■□□□□ 0.08
VPS28-216ENST00000533806 DYNLL2Q96FJ2 89 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 FAM227BQ96M60 508 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 HELLSQ9NRZ9 838 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 SWAP70Q9UH65 585 aa15.57■□□□□ 0.08
VPS28-216ENST00000533806 A0A0D9SFI3 127 aa15.56■□□□□ 0.08
VPS28-216ENST00000533806 C16orf86Q6ZW13 317 aa15.56■□□□□ 0.08
VPS28-216ENST00000533806 FASTKD5Q7L8L6 764 aaKnown RBP15.56■□□□□ 0.08
VPS28-216ENST00000533806 IFNL3Q8IZI9 196 aa15.56■□□□□ 0.08
VPS28-216ENST00000533806 ARPP21Q9UBL0 812 aaPredicted RBP15.56■□□□□ 0.08
VPS28-216ENST00000533806 SLC45A1Q9Y2W3 748 aa15.56■□□□□ 0.08
VPS28-216ENST00000533806 NAV1Q8NEY1 1877 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 ROBO3Q96MS0 1386 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 ADGRA2Q96PE1 1338 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 TRIM6-TRIM34B2RNG4 842 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 PDHXO00330 501 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 GSPT1P15170 499 aaKnown RBP15.55■□□□□ 0.08
VPS28-216ENST00000533806 SDSP20132 328 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 CDK8P49336 464 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 BACE1P56817 501 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 ABCB5Q2M3G0 1257 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 CCDC129Q6ZRS4 1044 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 PROCA1Q8NCQ7 364 aaPredicted RBP15.55■□□□□ 0.08
VPS28-216ENST00000533806 RILPL2Q969X0 211 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 DDRGK1Q96HY6 314 aa15.55■□□□□ 0.08
VPS28-216ENST00000533806 TLR2O60603 784 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 NMIQ13287 307 aaPredicted RBP15.54■□□□□ 0.08
VPS28-216ENST00000533806 TAF1CQ15572 869 aaPredicted RBP15.54■□□□□ 0.08
VPS28-216ENST00000533806 MCMDC2Q4G0Z9 681 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 TTC22Q5TAA0 569 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 VPS53Q5VIR6 699 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 CENPQQ7L2Z9 268 aaPredicted RBP15.54■□□□□ 0.08
VPS28-216ENST00000533806 SIAH1Q8IUQ4 282 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 AS3MTQ9HBK9 375 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 ZFYVE28Q9HCC9 887 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 AGTPBP1Q9UPW5 1226 aa15.54■□□□□ 0.08
VPS28-216ENST00000533806 C19orf81C9J6K1 198 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 FKTNO75072 461 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 CAP1Q01518 475 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 DGKZQ13574 1117 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 ALX1Q15699 326 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 TREML2Q5T2D2 321 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 C17orf99Q6UX52 265 aa15.53■□□□□ 0.08
VPS28-216ENST00000533806 ZNF589Q86UQ0 364 aaPredicted RBP15.53■□□□□ 0.08
VPS28-216ENST00000533806 USP17L10C9JJH3 530 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 HMGCS2P54868 508 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 MTMR2Q13614 643 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 SEPT2Q15019 361 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 GADL1Q6ZQY3 521 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 AMOTL1Q8IY63 956 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 ACER1Q8TDN7 264 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 CCDC17Q96LX7 622 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.52■□□□□ 0.08
VPS28-216ENST00000533806 KIAA1683Q9H0B3 1180 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 EMILIN3Q9NT22 766 aa15.52■□□□□ 0.08
VPS28-216ENST00000533806 APPP05067 770 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 CYP2C8P10632 490 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 AKR1B1P15121 316 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 RASA1P20936 1047 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 TDO2P48775 406 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 SP3Q02447 781 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 TMEM179Q6ZVK1 233 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 TNS4Q8IZW8 715 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 C12orf42Q96LP6 360 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 NACAP1Q9BZK3 213 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 CABP5Q9NP86 173 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 ATAD5Q96QE3 1844 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 HTTP42858 3142 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 CASP8AP2Q9UKL3 1982 aa15.51■□□□□ 0.07
VPS28-216ENST00000533806 BAZ2AQ9UIF9 1905 aaKnown RBP15.51■□□□□ 0.07
VPS28-216ENST00000533806 A0A1W2PRG0 241 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 MINDY4BA8MYZ0 360 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 HSPD1P10809 573 aaKnown RBP15.5■□□□□ 0.07
VPS28-216ENST00000533806 BCRP11274 1271 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 HOXA7P31268 230 aaPredicted RBP15.5■□□□□ 0.07
VPS28-216ENST00000533806 RAB3GAP1Q15042 981 aa15.5■□□□□ 0.07
VPS28-216ENST00000533806 CTU1Q7Z7A3 348 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms