RNA–Protein interactions for RNA: ENST00000494458.1

MSH5-217, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-217ENST00000494458 PLIN4Q96Q06 1357 aa7.96□□□□□ -1.14
MSH5-217ENST00000494458 COL2A1P02458 1487 aaPredicted RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 IGKV6D-41A0A0C4DH26 115 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 PTPDC1A2A3K4 754 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 ZBTB43O43298 467 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 TRAK2O60296 914 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 RASA1P20936 1047 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 CRKP46108 304 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 CCT2P78371 535 aaKnown RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 FGD1P98174 961 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 STK3Q13188 491 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 NBR1Q14596 966 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 AOC3Q16853 763 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 KLHL40Q2TBA0 621 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 DALRD3Q5D0E6 543 aaKnown RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 ATL3Q6DD88 541 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 TEX11Q8IYF3 940 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 FANCBQ8NB91 859 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 FBXO18Q8NFZ0 1043 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 NEDD1Q8NHV4 660 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 MXD3Q9BW11 206 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 ZSCAN16Q9H4T2 348 aaPredicted RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 NCOA5Q9HCD5 579 aaKnown RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 DDX4Q9NQI0 724 aaKnown RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 KIF3AQ9Y496 699 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 SLC12A7Q9Y666 1083 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 CDK5RAP2Q96SN8 1893 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 TNKSO95271 1327 aa7.95□□□□□ -1.14
MSH5-217ENST00000494458 BAZ2AQ9UIF9 1905 aaKnown RBP7.95□□□□□ -1.14
MSH5-217ENST00000494458 LAMB1P07942 1786 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 FER1L6Q2WGJ9 1857 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CCDC196A0A1B0GTZ2 297 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 GOLGA8BA8MQT2 603 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 PPIP5K2O43314 1243 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 RANBP6O60518 1105 aaKnown RBP7.94□□□□□ -1.14
MSH5-217ENST00000494458 DDAH1O94760 285 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CALM1P0DP23 149 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CALM2P0DP24 149 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CALM3P0DP25 149 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 USP5P45974 858 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CDK8P49336 464 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 METAP2P50579 478 aaKnown RBP eCLIP7.94□□□□□ -1.14
MSH5-217ENST00000494458 RESTQ13127 1097 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 WTAPQ15007 396 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 R3HDM1Q15032 1099 aaKnown RBP7.94□□□□□ -1.14
MSH5-217ENST00000494458 IER5LQ5T953 404 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 FKBP1CQ5VVH2 108 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 RSBN1LQ6PCB5 846 aaPredicted RBP7.94□□□□□ -1.14
MSH5-217ENST00000494458 CDC37L1Q7L3B6 337 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 IQCA1Q86XH1 822 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 ZNF654Q8IZM8 581 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 CRACR2BQ8N4Y2 399 aaPredicted RBP7.94□□□□□ -1.14
MSH5-217ENST00000494458 AGBL3Q8NEM8 1001 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.94□□□□□ -1.14
MSH5-217ENST00000494458 OSBPL5Q9H0X9 879 aaPredicted RBP7.94□□□□□ -1.14
MSH5-217ENST00000494458 ZNF287Q9HBT7 754 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 ZNRF3Q9ULT6 936 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 ELP1O95163 1332 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 ATRNL1Q5VV63 1379 aa7.94□□□□□ -1.14
MSH5-217ENST00000494458 ERICH2A1L162 156 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 CCDC69A6NI79 296 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 GOLGA6L22H0YM25 854 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 NFKBIEO00221 500 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 ENTPD3O75355 529 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 CDKL5O76039 1030 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 FMNL1O95466 1100 aaPredicted RBP7.93□□□□□ -1.14
MSH5-217ENST00000494458 SMARCA1P28370 1054 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 IARSP41252 1262 aaKnown RBP7.93□□□□□ -1.14
MSH5-217ENST00000494458 MAP3K10Q02779 954 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 TATDN1Q6P1N9 297 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 TTC6Q86TZ1 520 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 MAPKAPK5Q8IW41 473 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 DYNLL2Q96FJ2 89 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 UBAC1Q9BSL1 405 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 DHX36Q9H2U1 1008 aaKnown RBP7.93□□□□□ -1.14
MSH5-217ENST00000494458 USP40Q9NVE5 1235 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 FAM198AQ9UFP1 575 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 SWAP70Q9UH65 585 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 PGAP2Q9UHJ9 254 aa7.93□□□□□ -1.14
MSH5-217ENST00000494458 GOLGA8AA7E2F4 631 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 G3V3G9 751 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 FZD9O00144 591 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 PSMD14O00487 310 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 PRPF3O43395 683 aaKnown RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 PRDM1O75626 825 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 POLR3DP05423 398 aaPredicted RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 U2AF2P26368 475 aaKnown RBP eCLIP7.92□□□□□ -1.141e-15■■■■□ 25.7
MSH5-217ENST00000494458 ZNF280AP59817 542 aaPredicted RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 TFAP4Q01664 338 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 NFIAQ12857 509 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 PKN1Q16512 942 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 IFIT1BQ5T764 474 aaKnown RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 DCAF8Q5TAQ9 597 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 MCTP1Q6DN14 999 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 SH3BP5LQ7L8J4 393 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 USP48Q86UV5 1035 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 FOXP4Q8IVH2 680 aaPredicted RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 AMOTL1Q8IY63 956 aa7.92□□□□□ -1.14
MSH5-217ENST00000494458 FAM177A1Q8N128 213 aaPredicted RBP7.92□□□□□ -1.14
MSH5-217ENST00000494458 SLAIN1Q8ND83 568 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms