RNA–Protein interactions for RNA: ENST00000476162.5

VARS2-207, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best)

Gene VARS2, Length 2,228 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-207ENST00000476162 HPSEQ9Y251 543 aa18.42■□□□□ 0.54
VARS2-207ENST00000476162 TOB1P50616 345 aaPredicted RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 NFIXQ14938 502 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 ZRSR1Q15695 479 aaKnown RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 IFIT1BQ5T764 474 aaKnown RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 IQCA1Q86XH1 822 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 AOPEPQ8N6M6 819 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 DCP1AQ9NPI6 582 aaPredicted RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 SPTLC3Q9NUV7 552 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 CLIP2Q9UDT6 1046 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 IRS2Q9Y4H2 1338 aa18.41■□□□□ 0.54
VARS2-207ENST00000476162 CRNKL1Q9BZJ0 848 aaKnown RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 FOXP1Q9H334 677 aaPredicted RBP18.41■□□□□ 0.54
VARS2-207ENST00000476162 DUOX1Q9NRD9 1551 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 BIN1O00499 593 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 PCP11498 1178 aaKnown RBP18.4■□□□□ 0.54
VARS2-207ENST00000476162 NR5A1Q13285 461 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 PPP2R5BQ15173 497 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 ANKIB1Q9P2G1 1089 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 MYH2Q9UKX2 1941 aa18.4■□□□□ 0.54
VARS2-207ENST00000476162 CDC25BP30305 580 aa18.39■□□□□ 0.54
VARS2-207ENST00000476162 RESP18Q5W5W9 173 aa18.39■□□□□ 0.54
VARS2-207ENST00000476162 CATIPQ7Z7H3 387 aa18.39■□□□□ 0.54
VARS2-207ENST00000476162 TIGD1Q96MW7 591 aa18.39■□□□□ 0.54
VARS2-207ENST00000476162 RNF26Q9BY78 433 aaPredicted RBP18.39■□□□□ 0.54
VARS2-207ENST00000476162 SPDYE4A6NLX3 237 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 VGLL3A8MV65 326 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 CUTAO60888 179 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 RBM6P78332 1123 aaKnown RBP18.39■□□□□ 0.53
VARS2-207ENST00000476162 LRMPQ12912 555 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 OXER1Q8TDS5 423 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 LRRC4BQ9NT99 713 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 ATP8A2Q9NTI2 1148 aa18.39■□□□□ 0.53
VARS2-207ENST00000476162 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.39■□□□□ 0.53
VARS2-207ENST00000476162 FAM237AA0A1B0GTK4 181 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 CYP2D6P10635 497 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 AKAP17AQ02040 695 aaKnown RBP18.38■□□□□ 0.53
VARS2-207ENST00000476162 GRAPQ13588 217 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 CNBD1Q8NA66 436 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 GRAPLQ8TC17 118 aaPredicted RBP18.38■□□□□ 0.53
VARS2-207ENST00000476162 MRFAP1L1Q96HT8 127 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 TNRC6CQ9HCJ0 1690 aaKnown RBP18.38■□□□□ 0.53
VARS2-207ENST00000476162 PLEKHA8P1O95397 391 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 NLRP12P59046 1061 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 FUT2Q10981 343 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 TROAPQ12815 778 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 CCDC144BQ3MJ40 725 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 RILPL1Q5EBL4 403 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 MEX3CQ5U5Q3 659 aaKnown RBP18.38■□□□□ 0.53
VARS2-207ENST00000476162 DZIP1Q86YF9 867 aaKnown RBP18.38■□□□□ 0.53
VARS2-207ENST00000476162 PDCL2Q8N4E4 241 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 SHISA4Q96DD7 197 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 TAF1LQ8IZX4 1826 aa18.38■□□□□ 0.53
VARS2-207ENST00000476162 hCG_1642624A0A1W2PR95 340 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 NMT2O60551 498 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 PKN1Q16512 942 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 KRI1Q8N9T8 703 aaKnown RBP18.37■□□□□ 0.53
VARS2-207ENST00000476162 MYH13Q9UKX3 1938 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 LY75O60449 1722 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 ORC4O43929 436 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 FAM47AQ5JRC9 791 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 SPECC1Q5M775 1068 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 ISM2Q6H9L7 571 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 BPIFA3Q9BQP9 254 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 CGNQ9P2M7 1197 aaKnown RBP18.37■□□□□ 0.53
VARS2-207ENST00000476162 KCNH3Q9ULD8 1083 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 PCDHB6Q9Y5E3 794 aa18.37■□□□□ 0.53
VARS2-207ENST00000476162 V9GY48 417 aaPredicted RBP18.37■□□□□ 0.53
VARS2-207ENST00000476162 LONRF3Q496Y0 759 aa18.36■□□□□ 0.53
VARS2-207ENST00000476162 SPTY2D1Q68D10 685 aaPredicted RBP18.36■□□□□ 0.53
VARS2-207ENST00000476162 RBM28Q9NW13 759 aaKnown RBP18.36■□□□□ 0.53
VARS2-207ENST00000476162 ARPP21Q9UBL0 812 aaPredicted RBP18.36■□□□□ 0.53
VARS2-207ENST00000476162 LEMD3Q9Y2U8 911 aa18.36■□□□□ 0.53
VARS2-207ENST00000476162 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.35■□□□□ 0.53
VARS2-207ENST00000476162 PRPF3O43395 683 aaKnown RBP18.35■□□□□ 0.53
VARS2-207ENST00000476162 GRIN1Q05586 938 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 CABP5Q9NP86 173 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 IGSF3O75054 1194 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 CALM1P0DP23 149 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 CALM2P0DP24 149 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 CALM3P0DP25 149 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 ATP2B1P20020 1258 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 PNOCQ13519 176 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 SLC4A8Q2Y0W8 1093 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 SBK1Q52WX2 424 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 SEPT12Q8IYM1 358 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 CACTINQ8WUQ7 758 aaKnown RBP18.35■□□□□ 0.53
VARS2-207ENST00000476162 GPR101Q96P66 508 aaPredicted RBP18.35■□□□□ 0.53
VARS2-207ENST00000476162 MCM9Q9NXL9 1143 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 TUBE1Q9UJT0 475 aa18.35■□□□□ 0.53
VARS2-207ENST00000476162 FBXO2Q9UK22 296 aaPredicted RBP18.35■□□□□ 0.53
VARS2-207ENST00000476162 ZBTB22O15209 634 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 DDAH1O94760 285 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 LDHBP07195 334 aaKnown RBP18.34■□□□□ 0.53
VARS2-207ENST00000476162 USP17L8P0C7I0 530 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 XBP1P17861 261 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 PTPREP23469 700 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 PRR5LQ6MZQ0 368 aa18.34■□□□□ 0.53
VARS2-207ENST00000476162 TMED8Q6PL24 325 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms