RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ENTPD3O75355 529 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 POTEIP0CG38 1075 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 POTEJP0CG39 1038 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 PPP2R2DQ66LE6 453 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 CWC27Q6UX04 472 aaKnown RBP10.49□□□□□ -0.73
SYNE1-214ENST00000454018 SLAIN1Q8ND83 568 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 FLT1P17948 1338 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 CNTNAP1P78357 1384 aa10.49□□□□□ -0.73
SYNE1-214ENST00000454018 TCP10L2B9ZVM9 353 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 USP5P45974 858 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 CACNB3P54284 484 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 NFIAQ12857 509 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 PADI6Q6TGC4 694 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 KRT26Q7Z3Y9 468 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 SMC1BQ8NDV3 1235 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 RBM46Q8TBY0 533 aaKnown RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 STRBPQ96SI9 672 aaKnown RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 SEC62Q99442 399 aaKnown RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 ATP8A2Q9NTI2 1148 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 ADGRG1Q9Y653 693 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 ZMYM6O95789 1325 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 TOMM70O94826 608 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 PICALMQ13492 652 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 GIMAP6Q6P9H5 292 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 CDC37L1Q7L3B6 337 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 ZNF589Q86UQ0 364 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 SP7Q8TDD2 431 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 TGFBRAP1Q8WUH2 860 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 FAM151AQ8WW52 585 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 OSBPL5Q9H0X9 879 aaPredicted RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 DEFB129Q9H1M3 183 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 DDX4Q9NQI0 724 aaKnown RBP10.48□□□□□ -0.73
SYNE1-214ENST00000454018 FAM198AQ9UFP1 575 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 SLC4A4Q9Y6R1 1079 aa10.48□□□□□ -0.73
SYNE1-214ENST00000454018 GREB1LQ9C091 1923 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 POM121CA8CG34 1229 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 SGSM2O43147 1006 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 RASA3Q14644 834 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 MAP1SQ66K74 1059 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 CCDC129Q6ZRS4 1044 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 MAPKAPK5Q8IW41 473 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 SDR42E1Q8WUS8 393 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 HOOK2Q96ED9 719 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 CALR3Q96L12 384 aaKnown RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 ESYT1Q9BSJ8 1104 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 NACAP1Q9BZK3 213 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 DHX36Q9H2U1 1008 aaKnown RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 DCP1AQ9NPI6 582 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 ARPP21Q9UBL0 812 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 MKRN1Q9UHC7 482 aaKnown RBP10.47□□□□□ -0.73
SYNE1-214ENST00000454018 PTPRFP10586 1907 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 MYH4Q9Y623 1939 aa10.47□□□□□ -0.73
SYNE1-214ENST00000454018 SSC5DA1L4H1 1573 aa10.46□□□□□ -0.73
SYNE1-214ENST00000454018 PHIPQ8WWQ0 1821 aa10.46□□□□□ -0.73
SYNE1-214ENST00000454018 ADM5C9JUS6 153 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 TCP10Q12799 353 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 TYW1BQ6NUM6 668 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 AMOTL1Q8IY63 956 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 GLIS2Q9BZE0 524 aaPredicted RBP10.46□□□□□ -0.74
SYNE1-214ENST00000454018 TMEM39BQ9GZU3 492 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 IL25Q9H293 177 aa10.46□□□□□ -0.74
SYNE1-214ENST00000454018 GSG1L2A8MUP6 293 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 PATL2C9JE40 543 aaKnown RBP10.45□□□□□ -0.74
SYNE1-214ENST00000454018 PRKAB2O43741 272 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 EIF5BO60841 1220 aaKnown RBP10.45□□□□□ -0.74
SYNE1-214ENST00000454018 APPP05067 770 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 HLA-DOAP06340 250 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 HSPD1P10809 573 aaKnown RBP10.45□□□□□ -0.74
SYNE1-214ENST00000454018 NF2P35240 595 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 TDO2P48775 406 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 FSTL1Q12841 308 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 ZSCAN29Q8IWY8 852 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-214ENST00000454018 CDCA5Q96FF9 252 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 TEPSINQ96N21 525 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 CSRNP1Q96S65 589 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 DSCC1Q9BVC3 393 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 NAPBQ9H115 298 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 EPB41L4AQ9HCS5 686 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-214ENST00000454018 MCM9Q9NXL9 1143 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 ROBO3Q96MS0 1386 aa10.45□□□□□ -0.74
SYNE1-214ENST00000454018 FOXP2O15409 715 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 REC8O95072 547 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 ABL2P42684 1182 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 SUPT20HL1Q3ZLR7 823 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 VPS53Q5VIR6 699 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 FOXD4L5Q5VV16 416 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-214ENST00000454018 ASTLQ6HA08 431 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-214ENST00000454018 KIAA1211Q6ZU35 1233 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 TTC6Q86TZ1 520 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 USP48Q86UV5 1035 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 IFNL3Q8IZI9 196 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 FOXD4L4Q8WXT5 416 aaPredicted RBP10.44□□□□□ -0.74
SYNE1-214ENST00000454018 GLMNQ92990 594 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 EHD4Q9H223 541 aa10.44□□□□□ -0.74
SYNE1-214ENST00000454018 SCAF8Q9UPN6 1271 aaKnown RBP10.44□□□□□ -0.74
SYNE1-214ENST00000454018 PASKQ96RG2 1323 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 DDTLA6NHG4 134 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-214ENST00000454018 SLC34A2O95436 690 aa10.43□□□□□ -0.74
SYNE1-214ENST00000454018 ITGBL1O95965 494 aaPredicted RBP10.43□□□□□ -0.74
SYNE1-214ENST00000454018 POLR3DP05423 398 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms