RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ANKS1AQ92625 1134 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 TRIM34Q9BYJ4 488 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.79■□□□□ 0.28
SF3B1-204ENST00000414963 SIPA1L1O43166 1804 aa16.79■□□□□ 0.28
SF3B1-204ENST00000414963 TSPY2A6NKD2 308 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 SH2B2O14492 632 aaPredicted RBP16.78■□□□□ 0.28
SF3B1-204ENST00000414963 LIFRP42702 1097 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 NOVP48745 357 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 SART3Q15020 963 aaKnown RBP16.78■□□□□ 0.28
SF3B1-204ENST00000414963 SUPT20HL1Q3ZLR7 823 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 CHST3Q7LGC8 479 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 IQCA1Q86XH1 822 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 TMTC2Q8N394 836 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 TCEANC2Q96MN5 208 aa16.78■□□□□ 0.28
SF3B1-204ENST00000414963 ZSCAN10Q96SZ4 725 aaPredicted RBP16.78■□□□□ 0.28
SF3B1-204ENST00000414963 ANGEL1Q9UNK9 670 aaKnown RBP16.78■□□□□ 0.28
SF3B1-204ENST00000414963 SCAF8Q9UPN6 1271 aaKnown RBP16.78■□□□□ 0.28
SF3B1-204ENST00000414963 PLIN4Q96Q06 1357 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 IFIT3O14879 490 aaKnown RBP16.77■□□□□ 0.28
SF3B1-204ENST00000414963 TSPY3P0CV98 308 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 TSPY8P0CW00 308 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 BECN1Q14457 450 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 SEC23AQ15436 765 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 CERKLQ49MI3 558 aaPredicted RBP16.77■□□□□ 0.28
SF3B1-204ENST00000414963 EAPPQ56P03 285 aaPredicted RBP16.77■□□□□ 0.28
SF3B1-204ENST00000414963 FAM47AQ5JRC9 791 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 NBPF12Q5TAG4 269 aaPredicted RBP16.77■□□□□ 0.28
SF3B1-204ENST00000414963 KRT26Q7Z3Y9 468 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 SGMS1Q86VZ5 419 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 UBAC1Q9BSL1 405 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.77■□□□□ 0.28
SF3B1-204ENST00000414963 TBC1D2Q9BYX2 928 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 IL17RBQ9NRM6 502 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 LIMCH1Q9UPQ0 1083 aa16.77■□□□□ 0.28
SF3B1-204ENST00000414963 IGKV6D-41A0A0C4DH26 115 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 PHF20L1A8MW92 1017 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 SLURP2P0DP57 97 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 TMEM67Q5HYA8 995 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 DCAF15Q66K64 600 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 CDC37L1Q7L3B6 337 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 LDHDQ86WU2 507 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 DGKHQ86XP1 1220 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 ZSCAN31Q96LW9 406 aaPredicted RBP16.76■□□□□ 0.27
SF3B1-204ENST00000414963 LRRC2Q9BYS8 371 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 LY9Q9HBG7 655 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 ZNF112Q9UJU3 913 aa16.76■□□□□ 0.27
SF3B1-204ENST00000414963 ERICH2A1L162 156 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 FAM196BA6NMK8 535 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 AKR1B1P15121 316 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 FGD1P98174 961 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 RRP1BQ14684 758 aaKnown RBP16.75■□□□□ 0.27
SF3B1-204ENST00000414963 PPP4R3BQ5MIZ7 849 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 MIGA2Q7L4E1 593 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 HSCBQ8IWL3 235 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 ENAHQ8N8S7 591 aaPredicted RBP16.75■□□□□ 0.27
SF3B1-204ENST00000414963 BRF1Q92994 677 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 ZNF274Q96GC6 653 aaPredicted RBP16.75■□□□□ 0.27
SF3B1-204ENST00000414963 NMRK2Q9NPI5 230 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 GPHNQ9NQX3 736 aaPredicted RBP16.75■□□□□ 0.27
SF3B1-204ENST00000414963 GINM1Q9NU53 330 aa16.75■□□□□ 0.27
SF3B1-204ENST00000414963 TNKSO95271 1327 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 ADM5C9JUS6 153 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 K7ELQ4 463 aaPredicted RBP16.74■□□□□ 0.27
SF3B1-204ENST00000414963 WTAPQ15007 396 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 RCSD1Q6JBY9 416 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 TMEM179Q6ZVK1 233 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 USP48Q86UV5 1035 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 ZKSCAN3Q9BRR0 538 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 ZNF341Q9BYN7 854 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 TPCN1Q9ULQ1 816 aa16.74■□□□□ 0.27
SF3B1-204ENST00000414963 NMT2O60551 498 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 POTEIP0CG38 1075 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 POTEJP0CG39 1038 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 CAP2P40123 477 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 RCAN1P53805 252 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 ABCB5Q2M3G0 1257 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 PRAMEF18Q5VWM3 479 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 TMX3Q96JJ7 454 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 KANSL2Q9H9L4 492 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 SH2B1Q9NRF2 756 aaPredicted RBP16.73■□□□□ 0.27
SF3B1-204ENST00000414963 MTMR4Q9NYA4 1195 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 BRPF3Q9ULD4 1205 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 CLEC11AQ9Y240 323 aa16.73■□□□□ 0.27
SF3B1-204ENST00000414963 SSC5DA1L4H1 1573 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 CTNND1O60716 968 aaKnown RBP16.72■□□□□ 0.27
SF3B1-204ENST00000414963 GUCY1A2P33402 732 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 JAG1P78504 1218 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 APOBRQ0VD83 1088 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 IFIT1BQ5T764 474 aaKnown RBP16.72■□□□□ 0.27
SF3B1-204ENST00000414963 CDCA5Q96FF9 252 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 CEP95Q96GE4 821 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 IPO9Q96P70 1041 aaKnown RBP16.72■□□□□ 0.27
SF3B1-204ENST00000414963 SENP2Q9HC62 589 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 CABP5Q9NP86 173 aa16.72■□□□□ 0.27
SF3B1-204ENST00000414963 MPHOSPH10O00566 681 aaKnown RBP16.71■□□□□ 0.27
SF3B1-204ENST00000414963 PFKFB2O60825 505 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 PDIA3P30101 505 aaKnown RBP16.71■□□□□ 0.27
SF3B1-204ENST00000414963 CUL4AQ13619 759 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 ME3Q16798 604 aa16.71■□□□□ 0.27
SF3B1-204ENST00000414963 MKL1Q969V6 931 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms