RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 TRDNQ13061 729 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 ME3Q16798 604 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 STOX1Q6ZVD7 989 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 C16orf86Q6ZW13 317 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 LDHDQ86WU2 507 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 FOXP4Q8IVH2 680 aaPredicted RBP17.5■□□□□ 0.39
CAPN3-207ENST00000397200 CDAN1Q8IWY9 1227 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 TEPSINQ96N21 525 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 CNNM2Q9H8M5 875 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 TOMM22Q9NS69 142 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 ADM5C9JUS6 153 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 GABPAQ06546 454 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 TOB2Q14106 344 aaPredicted RBP17.5■□□□□ 0.39
CAPN3-207ENST00000397200 L1TD1Q5T7N2 865 aaKnown RBP17.5■□□□□ 0.39
CAPN3-207ENST00000397200 RALYLQ86SE5 291 aaKnown RBP17.5■□□□□ 0.39
CAPN3-207ENST00000397200 HOOK2Q96ED9 719 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 MKNK2Q9HBH9 465 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 SWAP70Q9UH65 585 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 TAOK2Q9UL54 1235 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 TPCN1Q9ULQ1 816 aa17.5■□□□□ 0.39
CAPN3-207ENST00000397200 NEDD4P46934 1319 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 CDK8P49336 464 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 RRP12Q5JTH9 1297 aaKnown RBP17.49■□□□□ 0.39
CAPN3-207ENST00000397200 CDC37L1Q7L3B6 337 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 USP48Q86UV5 1035 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 SLC44A5Q8NCS7 719 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 NCOA7Q8NI08 942 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 NEK1Q96PY6 1258 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 KRT23Q9C075 422 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 INCENPQ9NQS7 918 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 HERC5Q9UII4 1024 aaKnown RBP17.49■□□□□ 0.39
CAPN3-207ENST00000397200 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.49■□□□□ 0.39
CAPN3-207ENST00000397200 TACC3Q9Y6A5 838 aa17.49■□□□□ 0.39
CAPN3-207ENST00000397200 PRDM1O75626 825 aa17.48■□□□□ 0.39
CAPN3-207ENST00000397200 FGRP09769 529 aa17.48■□□□□ 0.39
CAPN3-207ENST00000397200 NBPF12Q5TAG4 269 aaPredicted RBP17.48■□□□□ 0.39
CAPN3-207ENST00000397200 PRAMEF18Q5VWM3 479 aa17.48■□□□□ 0.39
CAPN3-207ENST00000397200 METTL16Q86W50 562 aaKnown RBP17.48■□□□□ 0.39
CAPN3-207ENST00000397200 SMC3Q9UQE7 1217 aa17.48■□□□□ 0.39
CAPN3-207ENST00000397200 FAM196BA6NMK8 535 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 ORC4O43929 436 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 SUPT20HL1Q3ZLR7 823 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 MAP1SQ66K74 1059 aaPredicted RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 CCDC83Q8IWF9 413 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 GLIS2Q9BZE0 524 aaPredicted RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 MYH15Q9Y2K3 1946 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 B4E1Z4 1266 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 TBC1D12O60347 775 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 RANBP6O60518 1105 aaKnown RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 HMGB1P09429 215 aaKnown RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 SLURP2P0DP57 97 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 PDIA4P13667 645 aaKnown RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 YY1P25490 414 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 DCAF15Q66K64 600 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 MIGA2Q7L4E1 593 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 ZNF444Q8N0Y2 327 aaPredicted RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 ESR2Q92731 530 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 LARP6Q9BRS8 491 aaKnown RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 GZF1Q9H116 711 aaPredicted RBP17.47■□□□□ 0.39
CAPN3-207ENST00000397200 DNAJC18Q9H819 358 aa17.47■□□□□ 0.39
CAPN3-207ENST00000397200 GOLGA6L3A6NEY3 463 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 KDM4AO75164 1064 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 ZSCAN22P10073 491 aaPredicted RBP17.46■□□□□ 0.39
CAPN3-207ENST00000397200 SYT1P21579 422 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 SHMT1P34896 483 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 NT5C2P49902 561 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 CDCA5Q96FF9 252 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 AGXT2Q9BYV1 514 aa17.46■□□□□ 0.39
CAPN3-207ENST00000397200 DDX49Q9Y6V7 483 aaKnown RBP17.46■□□□□ 0.39
CAPN3-207ENST00000397200 STX6O43752 255 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 RASA1P20936 1047 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 GJB2P29033 226 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 NF2P35240 595 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 MAP3K10Q02779 954 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 DLK2Q6UY11 383 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 MB21D2Q8IYB1 491 aaPredicted RBP17.45■□□□□ 0.38
CAPN3-207ENST00000397200 TMEM87AQ8NBN3 555 aa17.45■□□□□ 0.38
CAPN3-207ENST00000397200 TSPY2A6NKD2 308 aa17.44■□□□□ 0.38
CAPN3-207ENST00000397200 MCM5P33992 734 aa17.44■□□□□ 0.38
CAPN3-207ENST00000397200 CERKLQ49MI3 558 aaPredicted RBP17.44■□□□□ 0.38
CAPN3-207ENST00000397200 CHADLQ6NUI6 762 aa17.44■□□□□ 0.38
CAPN3-207ENST00000397200 TATDN1Q6P1N9 297 aa17.44■□□□□ 0.38
CAPN3-207ENST00000397200 SSC5DA1L4H1 1573 aa17.44■□□□□ 0.38
CAPN3-207ENST00000397200 TSPY3P0CV98 308 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 TSPY8P0CW00 308 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 FAM47AQ5JRC9 791 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 DHX32Q7L7V1 743 aaKnown RBP17.43■□□□□ 0.38
CAPN3-207ENST00000397200 FBXL16Q8N461 479 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 CCDC17Q96LX7 622 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 ZNF341Q9BYN7 854 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 TFAP4Q01664 338 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 EXOSC10Q01780 885 aaKnown RBP17.43■□□□□ 0.38
CAPN3-207ENST00000397200 CYB5R4Q7L1T6 521 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 NKX2-3Q8TAU0 364 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 GPT2Q8TD30 523 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 TCEANC2Q96MN5 208 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 ZSWIM5Q9P217 1185 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 MTMR6Q9Y217 621 aa17.43■□□□□ 0.38
CAPN3-207ENST00000397200 KIF3CO14782 793 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms