RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NR5A1Q13285 461 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 GRIK5Q16478 980 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 PKN1Q16512 942 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 CRNKL1Q9BZJ0 848 aaKnown RBP16.11■□□□□ 0.17
SNCA-204ENST00000394989 TRIM5Q9C035 493 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 PCP11498 1178 aaKnown RBP16.11■□□□□ 0.17
SNCA-204ENST00000394989 GYS1P13807 737 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 IFIT1BQ5T764 474 aaKnown RBP16.11■□□□□ 0.17
SNCA-204ENST00000394989 OXER1Q8TDS5 423 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 FBXW7Q969H0 707 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 ATP8A2Q9NTI2 1148 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 NRBP1Q9UHY1 535 aa16.11■□□□□ 0.17
SNCA-204ENST00000394989 PLEKHA8P1O95397 391 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 DPCR1Q3MIW9 517 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 GOLGB1Q14789 3259 aaKnown RBP16.1■□□□□ 0.17
SNCA-204ENST00000394989 FAM237AA0A1B0GTK4 181 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 DYNC1I1O14576 645 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 ADRA2BP18089 450 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 RNF26Q9BY78 433 aaPredicted RBP16.1■□□□□ 0.17
SNCA-204ENST00000394989 FOXP1Q9H334 677 aaPredicted RBP16.1■□□□□ 0.17
SNCA-204ENST00000394989 MKRN1Q9UHC7 482 aaKnown RBP16.1■□□□□ 0.17
SNCA-204ENST00000394989 ORC4O43929 436 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 PTGS1P23219 599 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 RESP18Q5W5W9 173 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 SARM1Q6SZW1 724 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 IQCA1Q86XH1 822 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 PYCARDQ9ULZ3 195 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 LEMD3Q9Y2U8 911 aa16.1■□□□□ 0.17
SNCA-204ENST00000394989 hCG_1642624A0A1W2PR95 340 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 PPP2R5BQ15173 497 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 CRY2Q49AN0 593 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 FAM47AQ5JRC9 791 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 DZIP1Q86YF9 867 aaKnown RBP16.09■□□□□ 0.17
SNCA-204ENST00000394989 TRPC5Q9UL62 973 aaPredicted RBP16.09■□□□□ 0.17
SNCA-204ENST00000394989 XDHP47989 1333 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 SLC4A8Q2Y0W8 1093 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 SBK1Q52WX2 424 aa16.09■□□□□ 0.17
SNCA-204ENST00000394989 GOLGA6L19H0YKK7 550 aa16.08■□□□□ 0.17
SNCA-204ENST00000394989 SYKP43405 635 aa16.08■□□□□ 0.17
SNCA-204ENST00000394989 NOLC1Q14978 699 aaKnown RBP eCLIP16.08■□□□□ 0.17
SNCA-204ENST00000394989 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.08■□□□□ 0.17
SNCA-204ENST00000394989 JMYQ8N9B5 988 aa16.08■□□□□ 0.17
SNCA-204ENST00000394989 CERKQ8TCT0 537 aa16.08■□□□□ 0.17
SNCA-204ENST00000394989 ARPP21Q9UBL0 812 aaPredicted RBP16.08■□□□□ 0.17
SNCA-204ENST00000394989 SLC3A2P08195 630 aaKnown RBP16.08■□□□□ 0.16
SNCA-204ENST00000394989 USP17L8P0C7I0 530 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 GPSM2P81274 684 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 GRIN1Q05586 938 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 SAFBQ15424 915 aaKnown RBP eCLIP16.08■□□□□ 0.16
SNCA-204ENST00000394989 CATIPQ7Z7H3 387 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 CEP57L1Q8IYX8 460 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 TIGD1Q96MW7 591 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 DIXDC1Q155Q3 683 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 PPP4R3BQ5MIZ7 849 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 CCDC186Q7Z3E2 898 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 AOPEPQ8N6M6 819 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 KIAA1524Q8TCG1 905 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 VPS54Q9P1Q0 977 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 PCDHB6Q9Y5E3 794 aa16.08■□□□□ 0.16
SNCA-204ENST00000394989 GOLGA6L6A8MZA4 724 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 BIN1O00499 593 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 TMED8Q6PL24 325 aaPredicted RBP16.07■□□□□ 0.16
SNCA-204ENST00000394989 SMAP1Q8IYB5 467 aaPredicted RBP16.07■□□□□ 0.16
SNCA-204ENST00000394989 SPTLC3Q9NUV7 552 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 CUTAO60888 179 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 LDHBP07195 334 aaKnown RBP16.07■□□□□ 0.16
SNCA-204ENST00000394989 CCDC144BQ3MJ40 725 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 SPTY2D1Q68D10 685 aaPredicted RBP16.07■□□□□ 0.16
SNCA-204ENST00000394989 WDR66Q8TBY9 1149 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 MCM9Q9NXL9 1143 aa16.07■□□□□ 0.16
SNCA-204ENST00000394989 FAM205CA6NFA0 338 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 BECN2A8MW95 431 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 PRPF3O43395 683 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 SERPINB2P05120 415 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 TPM3P06753 285 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 RILPL1Q5EBL4 403 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 EARS2Q5JPH6 523 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 SPECC1Q5M775 1068 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 RCSD1Q6JBY9 416 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 C15orf52Q6ZUT6 534 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 SH3RF3Q8TEJ3 882 aaPredicted RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 PHF20Q9BVI0 1012 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 FBXO2Q9UK22 296 aaPredicted RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 V9GY48 417 aaPredicted RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 DDAH1O94760 285 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 TMTC3Q6ZXV5 915 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 KRI1Q8N9T8 703 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 RPGRQ92834 1020 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 CLIP2Q9UDT6 1046 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 BRWD3Q6RI45 1802 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 CDC25BP30305 580 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 RBM6P78332 1123 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 LRMPQ12912 555 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 MAPK8IP2Q13387 824 aaPredicted RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 LONRF3Q496Y0 759 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 RBM28Q9NW13 759 aaKnown RBP16.06■□□□□ 0.16
SNCA-204ENST00000394989 TUBE1Q9UJT0 475 aa16.06■□□□□ 0.16
SNCA-204ENST00000394989 CNTNAP5Q8WYK1 1306 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 DDR1Q08345 913 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 NPY5RQ15761 445 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms