RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 SLC5A1P13866 664 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 RXRAP19793 462 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 PHKA1P46020 1223 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 PDILTQ8N807 584 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 SPATA5Q8NB90 893 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 DDX17Q92841 729 aaKnown RBP11.4□□□□□ -0.58
COL17A1-203ENST00000393211 FERMT2Q96AC1 680 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 SYTL4Q96C24 671 aaPredicted RBP11.4□□□□□ -0.58
COL17A1-203ENST00000393211 RNF26Q9BY78 433 aaPredicted RBP11.4□□□□□ -0.58
COL17A1-203ENST00000393211 EPB41L4AQ9HCS5 686 aaPredicted RBP11.4□□□□□ -0.58
COL17A1-203ENST00000393211 ARFGAP3Q9NP61 516 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 WWC3Q9ULE0 1092 aa11.4□□□□□ -0.58
COL17A1-203ENST00000393211 RTL9Q8NET4 1388 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 ITIH6Q6UXX5 1313 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 CCDC151A5D8V7 595 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 GSG1L2A8MUP6 293 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 TUBBP07437 444 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 FECHP22830 423 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 TXLNAP40222 546 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 FMR1Q06787 632 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL17A1-203ENST00000393211 GPS2Q13227 327 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 FILIP1LQ4L180 1135 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 SH3RF1Q7Z6J0 888 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 DNAJC10Q8IXB1 793 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 TXLNBQ8N3L3 684 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 CEP112Q8N8E3 955 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 NKX2-3Q8TAU0 364 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 HNRNPLLQ8WVV9 542 aaKnown RBP11.39□□□□□ -0.59
COL17A1-203ENST00000393211 GSDMAQ96QA5 445 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 PYM1Q9BRP8 204 aaKnown RBP11.39□□□□□ -0.59
COL17A1-203ENST00000393211 STRN4Q9NRL3 753 aa11.39□□□□□ -0.59
COL17A1-203ENST00000393211 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.39□□□□□ -0.59
COL17A1-203ENST00000393211 IQSEC3Q9UPP2 1182 aaPredicted RBP11.39□□□□□ -0.59
COL17A1-203ENST00000393211 FOXN1O15353 648 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 MBD4O95243 580 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 TBC1D8O95759 1140 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PBX1P40424 430 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 TMED8Q6PL24 325 aaPredicted RBP11.38□□□□□ -0.59
COL17A1-203ENST00000393211 TOGARAM2Q6ZUX3 1019 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PPFIBP1Q86W92 1011 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 FANCBQ8NB91 859 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 CCDC85AQ96PX6 553 aaPredicted RBP11.38□□□□□ -0.59
COL17A1-203ENST00000393211 WDR24Q96S15 920 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 ANAPC4Q9UJX5 808 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 STRCP1A6NGW2 1772 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 TRIM75PA6NK02 468 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PRR29P0C7W0 189 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 ADKP55263 362 aaKnown RBP11.38□□□□□ -0.59
COL17A1-203ENST00000393211 CTDSPL2Q05D32 466 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 CDKAL1Q5VV42 579 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 APTXQ7Z2E3 356 aaKnown RBP11.38□□□□□ -0.59
COL17A1-203ENST00000393211 SRGAP1Q7Z6B7 1085 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 CNGA4Q8IV77 575 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 MAGEB6Q8N7X4 407 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 MYL10Q9BUA6 226 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PSD3Q9NYI0 1048 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 MYO1AQ9UBC5 1043 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 TRMT112Q9UI30 125 aaKnown RBP11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PCDHB6Q9Y5E3 794 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 ADGRG1Q9Y653 693 aa11.38□□□□□ -0.59
COL17A1-203ENST00000393211 PLCH1Q4KWH8 1693 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 KIF5CO60282 957 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 PCP11498 1178 aaKnown RBP11.37□□□□□ -0.59
COL17A1-203ENST00000393211 GUCY1A2P33402 732 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 AKAP17AQ02040 695 aaKnown RBP11.37□□□□□ -0.59
COL17A1-203ENST00000393211 GOLGA8FQ08AF8 430 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 GOLGA8DPQ0D2H9 430 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 CUL4BQ13620 913 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 TRIM14Q14142 442 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 RASGRP2Q7LDG7 609 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 ZNF654Q8IZM8 581 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 CCDC12Q8WUD4 166 aaPredicted RBP11.37□□□□□ -0.59
COL17A1-203ENST00000393211 MED15Q96RN5 788 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 PARD6BQ9BYG5 372 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 TSPYL1Q9H0U9 437 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 CSRNP2Q9H175 543 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 ST7Q9NRC1 585 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 ADD3Q9UEY8 706 aaKnown RBP11.37□□□□□ -0.59
COL17A1-203ENST00000393211 CDC23Q9UJX2 597 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 KCNJ14Q9UNX9 436 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 TTF2Q9UNY4 1162 aaKnown RBP11.37□□□□□ -0.59
COL17A1-203ENST00000393211 NUP98P52948 1817 aa11.37□□□□□ -0.59
COL17A1-203ENST00000393211 SYNRGQ9UMZ2 1314 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 PRPF3O43395 683 aaKnown RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 CALM1P0DP23 149 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 CALM2P0DP24 149 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 CALM3P0DP25 149 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 KRT2P35908 639 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 USP5P45974 858 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 TDO2P48775 406 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 GRIN1Q05586 938 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SPAG1Q07617 926 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SMC1AQ14683 1233 aaKnown RBP11.36□□□□□ -0.59
COL17A1-203ENST00000393211 HLFQ16534 295 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 MUM1L1Q5H9M0 696 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 SPECC1Q5M775 1068 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 TMTC1Q8IUR5 882 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 ZNF34Q8IZ26 560 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 IGSF22Q8N9C0 903 aa11.36□□□□□ -0.59
COL17A1-203ENST00000393211 UBAC1Q9BSL1 405 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms