RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 ARHGEF10LQ9HCE6 1279 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 ZKSCAN5Q9Y2L8 839 aa16.46■□□□□ 0.23
TCOF1-202ENST00000377797 TBCAO75347 108 aaKnown RBP16.46■□□□□ 0.22
TCOF1-202ENST00000377797 FAM114A1Q8IWE2 563 aa16.46■□□□□ 0.22
TCOF1-202ENST00000377797 ERCC4Q92889 916 aaPredicted RBP16.46■□□□□ 0.22
TCOF1-202ENST00000377797 SH2D4AQ9H788 454 aa16.46■□□□□ 0.22
TCOF1-202ENST00000377797 SEPT11Q9NVA2 429 aaKnown RBP16.46■□□□□ 0.22
TCOF1-202ENST00000377797 CHGBP05060 677 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 MATR3P43243 847 aaKnown RBP eCLIP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 NONOQ15233 471 aaKnown RBP eCLIP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 TXNRD1Q16881 649 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 SKILP12757 684 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 TOB2Q14106 344 aaPredicted RBP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 ENOX2Q16206 610 aaKnown RBP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 LINC00116Q8NCU8 138 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 CCDC150Q8NCX0 1101 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 IFNKQ9P0W0 207 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 CARMIL3Q8ND23 1372 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 KLRF2D3W0D1 207 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 SH2B2O14492 632 aaPredicted RBP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 NR1I2O75469 434 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 GOLGA8HP0CJ92 632 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 FCHSD1Q86WN1 690 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 RFX7Q2KHR2 1363 aa16.45■□□□□ 0.22
TCOF1-202ENST00000377797 RBM6P78332 1123 aaKnown RBP16.45■□□□□ 0.22
TCOF1-202ENST00000377797 USP17L8P0C7I0 530 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 MYL5Q02045 173 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 SPA17Q15506 151 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 TTC14Q96N46 770 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 CCNT1O60563 726 aaKnown RBP16.44■□□□□ 0.22
TCOF1-202ENST00000377797 KRT25Q7Z3Z0 450 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 CTAGE1Q96RT6 745 aa16.44■□□□□ 0.22
TCOF1-202ENST00000377797 DDAH1O94760 285 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 SCG2P13521 617 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 TXKP42681 527 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 RC3H1Q5TC82 1133 aaKnown RBP16.43■□□□□ 0.22
TCOF1-202ENST00000377797 LRRC47Q8N1G4 583 aaKnown RBP16.43■□□□□ 0.22
TCOF1-202ENST00000377797 CBX8Q9HC52 389 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 BCS1LQ9Y276 419 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 NPR1P16066 1061 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 URI1O94763 535 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-202ENST00000377797 LIFRP42702 1097 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 TDRD12Q587J7 1177 aaKnown RBP16.43■□□□□ 0.22
TCOF1-202ENST00000377797 SLC27A3Q5K4L6 730 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 PLCD1P51178 756 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 ADCY7P51828 1080 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 REXO1Q8N1G1 1221 aaKnown RBP16.43■□□□□ 0.22
TCOF1-202ENST00000377797 PCDHA7Q9UN72 937 aa16.43■□□□□ 0.22
TCOF1-202ENST00000377797 IL25Q9H293 177 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 SMCO2A6NFE2 343 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 PTGS1P23219 599 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 MTERF4Q7Z6M4 381 aaKnown RBP16.42■□□□□ 0.22
TCOF1-202ENST00000377797 GAS2L3Q86XJ1 694 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 TBC1D10CQ8IV04 446 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 FERMT2Q96AC1 680 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 KIF5CO60282 957 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 CCDC181Q5TID7 509 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 STXBP4Q6ZWJ1 553 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 FAM84BQ96KN1 310 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-202ENST00000377797 COL5A2P05997 1499 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-202ENST00000377797 SYCP3Q8IZU3 236 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 INCENPQ9NQS7 918 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 CLIC4Q9Y696 253 aa16.42■□□□□ 0.22
TCOF1-202ENST00000377797 PFKFB1P16118 471 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 TRIM21P19474 475 aaKnown RBP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 SF3B3Q15393 1217 aaKnown RBP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 BLIDQ8IZY5 108 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 GPKOWQ92917 476 aaPredicted RBP eCLIP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 PLS1Q14651 629 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 WWC2Q6AWC2 1192 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 DYNLL2Q96FJ2 89 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 RNF26Q9BY78 433 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 IFNAR1P17181 557 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 CHMP4BP1P59074 171 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 NOLC1Q14978 699 aaKnown RBP eCLIP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 HS1BP3Q53T59 392 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 MAP7D2Q96T17 732 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 NTSR2O95665 410 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 CERKLQ49MI3 558 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-202ENST00000377797 UBXN4Q92575 508 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 STAMQ92783 540 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 GLT8D2Q9H1C3 349 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 ABCC12Q96J65 1359 aa16.41■□□□□ 0.22
TCOF1-202ENST00000377797 KIF4BQ2VIQ3 1234 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 HSP90B2PQ58FF3 399 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 AIFM3Q96NN9 605 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 FTOQ9C0B1 505 aaKnown RBP eCLIP16.4■□□□□ 0.222e-6■□□□□ 9.3
TCOF1-202ENST00000377797 CD209Q9NNX6 404 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 FRMPD2Q68DX3 1309 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-202ENST00000377797 TCP10L2B9ZVM9 353 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 INTS5Q6P9B9 1019 aaKnown RBP16.4■□□□□ 0.22
TCOF1-202ENST00000377797 RUFY1Q96T51 708 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 CLCN1P35523 988 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 USH1GQ495M9 461 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 PPP4R3AQ6IN85 833 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 MASTLQ96GX5 879 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 NAP1L4Q99733 375 aaKnown RBP16.4■□□□□ 0.22
TCOF1-202ENST00000377797 COA1Q9GZY4 146 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 ACBD3Q9H3P7 528 aa16.4■□□□□ 0.22
TCOF1-202ENST00000377797 BRIP1Q9BX63 1249 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms