RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 ERCC4Q92889 916 aaPredicted RBP15.1■□□□□ 0.01
COL18A1-201ENST00000342220 RTL9Q8NET4 1388 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 MARCKSP29966 332 aaPredicted RBP15.1■□□□□ 0.01
COL18A1-201ENST00000342220 TTC6Q86TZ1 520 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 CNNM2Q9H8M5 875 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 GJA3Q9Y6H8 435 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 C4BP0C0L5 1744 aa15.1■□□□□ 0.01
COL18A1-201ENST00000342220 GSTO1P78417 241 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 TSGA10IPQ3SY00 556 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 CATIPQ7Z7H3 387 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 SH2B2O14492 632 aaPredicted RBP15.09■□□□□ 0.01
COL18A1-201ENST00000342220 ECE2O60344 883 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 TRIM22Q8IYM9 498 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 ZNF654Q8IZM8 581 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 ZNF710Q8N1W2 664 aa15.09■□□□□ 0.01
COL18A1-201ENST00000342220 SECISBP2LQ93073 1101 aaKnown RBP15.09■□□□□ 0.01
COL18A1-201ENST00000342220 V9GY48 417 aaPredicted RBP15.09■□□□□ 0.01
COL18A1-201ENST00000342220 POLD1P28340 1107 aa15.08■□□□□ 0.01
COL18A1-201ENST00000342220 GUCY1A2P33402 732 aa15.08■□□□□ 0.01
COL18A1-201ENST00000342220 ZRSR1Q15695 479 aaKnown RBP15.08■□□□□ 0.01
COL18A1-201ENST00000342220 CERS5Q8N5B7 392 aa15.08■□□□□ 0.01
COL18A1-201ENST00000342220 EYA3Q99504 573 aa15.08■□□□□ 0.01
COL18A1-201ENST00000342220 TCP10L2B9ZVM9 353 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 SSRP1Q08945 709 aaKnown RBP15.08■□□□□ 0
COL18A1-201ENST00000342220 TTLL6Q8N841 843 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 CNKSR1Q969H4 720 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 UIMC1Q96RL1 719 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 BCORQ6W2J9 1755 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 LIG1P18858 919 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 IRX3P78415 501 aaPredicted RBP15.08■□□□□ 0
COL18A1-201ENST00000342220 IKQ13123 557 aaPredicted RBP15.08■□□□□ 0
COL18A1-201ENST00000342220 NOLC1Q14978 699 aaKnown RBP eCLIP15.08■□□□□ 0
COL18A1-201ENST00000342220 STK38Q15208 465 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 DHX37Q8IY37 1157 aaKnown RBP15.08■□□□□ 0
COL18A1-201ENST00000342220 TDRD3Q9H7E2 651 aaKnown RBP15.08■□□□□ 0
COL18A1-201ENST00000342220 LY9Q9HBG7 655 aa15.08■□□□□ 0
COL18A1-201ENST00000342220 RFX7Q2KHR2 1363 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 A0A087WWV3 80 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 SEMA3EO15041 775 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 IRX5P78411 483 aaPredicted RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 HMGN5P82970 282 aaKnown RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 KAT14Q9H8E8 782 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 VPS54Q9P1Q0 977 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 NHSQ6T4R5 1651 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 NFIAQ12857 509 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 CTCFLQ8NI51 663 aaPredicted RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 PLEKHA8P1O95397 391 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 SPECC1Q5M775 1068 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 LRRC47Q8N1G4 583 aaKnown RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 ENAHQ8N8S7 591 aaPredicted RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 MYRIPQ8NFW9 859 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 ZSCAN10Q96SZ4 725 aaPredicted RBP15.07■□□□□ 0
COL18A1-201ENST00000342220 DAGLAQ9Y4D2 1042 aa15.07■□□□□ 0
COL18A1-201ENST00000342220 LAMB2P55268 1798 aa15.06■□□□□ 0
COL18A1-201ENST00000342220 SPEF2Q9C093 1822 aa15.06■□□□□ 0
COL18A1-201ENST00000342220 IGDCC4Q8TDY8 1250 aa15.06■□□□□ 0
COL18A1-201ENST00000342220 HPS5Q9UPZ3 1129 aa15.06■□□□□ 0
COL18A1-201ENST00000342220 HOXA10P31260 410 aaPredicted RBP15.06■□□□□ 0
COL18A1-201ENST00000342220 SPC24Q8NBT2 197 aa15.06■□□□□ 0
COL18A1-201ENST00000342220 ZNF274Q96GC6 653 aaPredicted RBP15.06■□□□□ 0
COL18A1-201ENST00000342220 CCDC192P0DO97 292 aa15.05■□□□□ 0
COL18A1-201ENST00000342220 ISM2Q6H9L7 571 aa15.05■□□□□ 0
COL18A1-201ENST00000342220 TEKT1Q969V4 418 aa15.05■□□□□ 0
COL18A1-201ENST00000342220 TMEM87BQ96K49 555 aa15.05■□□□□ 0
COL18A1-201ENST00000342220 COA1Q9GZY4 146 aa15.05■□□□□ 0
COL18A1-201ENST00000342220 FDPSP14324 419 aaKnown RBP15.05■□□□□ -0
COL18A1-201ENST00000342220 ZYXQ15942 572 aaKnown RBP15.05■□□□□ -0
COL18A1-201ENST00000342220 USP28Q96RU2 1077 aa15.05■□□□□ -0
COL18A1-201ENST00000342220 BRWD3Q6RI45 1802 aa15.05■□□□□ -0
COL18A1-201ENST00000342220 MROH7-TTC4A0A0A0MT08 1334 aa15.05■□□□□ -0
COL18A1-201ENST00000342220 SAFBQ15424 915 aaKnown RBP eCLIP15.04■□□□□ -0
COL18A1-201ENST00000342220 ZFPM1Q8IX07 1006 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 FANCBQ8NB91 859 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 UBA5Q9GZZ9 404 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 NUP62CLQ9H1M0 184 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 GPKOWQ92917 476 aaPredicted RBP eCLIP15.04■□□□□ -08e-7■■■■□ 25.3
COL18A1-201ENST00000342220 ATP8A2Q9NTI2 1148 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 FRMPD2Q68DX3 1309 aaPredicted RBP15.04■□□□□ -0
COL18A1-201ENST00000342220 SBF2Q86WG5 1849 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 BTBD18B2RXH4 712 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 GDF11O95390 407 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 NR5A1Q13285 461 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 MAP3K11Q16584 847 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 KRT40Q6A162 431 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 TBC1D22AQ8WUA7 517 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 STAG1Q8WVM7 1258 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 GPCPD1Q9NPB8 672 aa15.04■□□□□ -0
COL18A1-201ENST00000342220 CDKL5O76039 1030 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 U2AF2P26368 475 aaKnown RBP eCLIP15.03■□□□□ -0
COL18A1-201ENST00000342220 TEX2Q8IWB9 1127 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 SLF2Q8IX21 1173 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 PDCL2Q8N4E4 241 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 OGFOD1Q8N543 542 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 KCNF1Q9H3M0 494 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 DACT1Q9NYF0 836 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 LY75O60449 1722 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 CRKP46108 304 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 PRKG1Q13976 671 aa15.03■□□□□ -0
COL18A1-201ENST00000342220 SHROOM1Q2M3G4 852 aaPredicted RBP15.03■□□□□ -0
COL18A1-201ENST00000342220 MIGA2Q7L4E1 593 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms