RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RRP12Q5JTH9 1297 aaKnown RBP26.25■■□□□ 1.79
SDC3-202ENST00000339394 LDLRAD1Q5T700 205 aa26.25■■□□□ 1.79
SDC3-202ENST00000339394 TMEM88BA6NKF7 163 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 JAG1P78504 1218 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 ANKRD13AQ8IZ07 590 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 NKX2-3Q8TAU0 364 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 CCDC17Q96LX7 622 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 LAMB1P07942 1786 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 AKR1B1P15121 316 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 SNX14Q9Y5W7 946 aa26.24■■□□□ 1.79
SDC3-202ENST00000339394 RANBP6O60518 1105 aaKnown RBP26.23■■□□□ 1.79
SDC3-202ENST00000339394 TRDNQ13061 729 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 VGLL4Q14135 290 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 ABCB5Q2M3G0 1257 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 FAM47AQ5JRC9 791 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 SAPCD2Q86UD0 394 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 CNNM2Q9H8M5 875 aa26.23■■□□□ 1.79
SDC3-202ENST00000339394 UNCXA6NJT0 531 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 B4E1Z4 1266 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 MPHOSPH10O00566 681 aaKnown RBP26.22■■□□□ 1.79
SDC3-202ENST00000339394 GH2P01242 217 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 APLP1P51693 650 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 TFAP4Q01664 338 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 SCYL3Q8IZE3 742 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 ESR2Q92731 530 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 CLMNQ96JQ2 1002 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 KRT23Q9C075 422 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 UPF2Q9HAU5 1272 aaKnown RBP26.22■■□□□ 1.79
SDC3-202ENST00000339394 CSADQ9Y600 493 aa26.22■■□□□ 1.79
SDC3-202ENST00000339394 HUNKP57058 714 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 ADCK5Q3MIX3 580 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 NOL9Q5SY16 702 aaKnown RBP26.21■■□□□ 1.79
SDC3-202ENST00000339394 NCOA7Q8NI08 942 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 CABP5Q9NP86 173 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 ZBTB21Q9ULJ3 1066 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 PAPPA2Q9BXP8 1791 aa26.21■■□□□ 1.79
SDC3-202ENST00000339394 TSPY2A6NKD2 308 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 KDM4AO75164 1064 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 ASNSP08243 561 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 TSPY3P0CV98 308 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 TSPY8P0CW00 308 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 KRT32Q14532 448 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.2■■□□□ 1.79
SDC3-202ENST00000339394 C22orf23Q9BZE7 217 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.2■■□□□ 1.79
SDC3-202ENST00000339394 SNCAIPQ9Y6H5 919 aa26.2■■□□□ 1.79
SDC3-202ENST00000339394 NT5C2P49902 561 aa26.2■■□□□ 1.78
SDC3-202ENST00000339394 RALYLQ86SE5 291 aaKnown RBP26.2■■□□□ 1.78
SDC3-202ENST00000339394 PICK1Q9NRD5 415 aa26.2■■□□□ 1.78
SDC3-202ENST00000339394 GINM1Q9NU53 330 aa26.2■■□□□ 1.78
SDC3-202ENST00000339394 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.2■■□□□ 1.78
SDC3-202ENST00000339394 ZSWIM5Q9P217 1185 aa26.2■■□□□ 1.78
SDC3-202ENST00000339394 TLL2Q9Y6L7 1015 aa26.2■■□□□ 1.78
SDC3-202ENST00000339394 GUCY1A2P33402 732 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 COL9A3Q14050 684 aaPredicted RBP26.19■■□□□ 1.78
SDC3-202ENST00000339394 RAB3GAP1Q15042 981 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 TMEM179Q6ZVK1 233 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 NEDD1Q8NHV4 660 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 NEK1Q96PY6 1258 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 ELP3Q9H9T3 547 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 ABT1Q9ULW3 272 aaKnown RBP26.19■■□□□ 1.78
SDC3-202ENST00000339394 LAMA4Q16363 1823 aa26.19■■□□□ 1.78
SDC3-202ENST00000339394 ANAPC15P60006 121 aa26.18■■□□□ 1.78
SDC3-202ENST00000339394 SEPT2Q15019 361 aa26.18■■□□□ 1.78
SDC3-202ENST00000339394 PTPRAP18433 802 aa26.17■■□□□ 1.78
SDC3-202ENST00000339394 MB21D2Q8IYB1 491 aaPredicted RBP26.17■■□□□ 1.78
SDC3-202ENST00000339394 SLC10A4Q96EP9 437 aa26.17■■□□□ 1.78
SDC3-202ENST00000339394 CREBZFQ9NS37 354 aa26.17■■□□□ 1.78
SDC3-202ENST00000339394 CCDC84Q86UT8 332 aaPredicted RBP26.16■■□□□ 1.78
SDC3-202ENST00000339394 JAKMIP1Q96N16 626 aaKnown RBP26.16■■□□□ 1.78
SDC3-202ENST00000339394 IL17RBQ9NRM6 502 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 TRPM7Q96QT4 1865 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 NMT2O60551 498 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 RBM25P49756 843 aaKnown RBP26.16■■□□□ 1.78
SDC3-202ENST00000339394 C1QTNF8P60827 252 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 CYB5R4Q7L1T6 521 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 ZHX2Q9Y6X8 837 aa26.16■■□□□ 1.78
SDC3-202ENST00000339394 PLIN4Q96Q06 1357 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 IGKV6D-41A0A0C4DH26 115 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 CHST3Q7LGC8 479 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 ERO1BQ86YB8 467 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 CNKSR2Q8WXI2 1034 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 CEP95Q96GE4 821 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 ZKSCAN3Q9BRR0 538 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 KANSL2Q9H9L4 492 aa26.15■■□□□ 1.78
SDC3-202ENST00000339394 USP17L5A8MUK1 530 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 PSMA5P28066 241 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 IQCA1Q86XH1 822 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 CLEC10AQ8IUN9 316 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 IL17RAQ96F46 866 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 TCP11L1Q9NUJ3 509 aa26.14■■□□□ 1.78
SDC3-202ENST00000339394 SPDYE5A6NIY4 337 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 HMGB1P09429 215 aaKnown RBP26.13■■□□□ 1.77
SDC3-202ENST00000339394 MCM5P33992 734 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 ANTXR2P58335 489 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 RGMBQ6NW40 437 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 OPTNQ96CV9 577 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 TBC1D32Q96NH3 1257 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 MTMR4Q9NYA4 1195 aa26.13■■□□□ 1.77
SDC3-202ENST00000339394 CASTP20810 708 aaKnown RBP26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms