RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NOL7Q9UMY1 257 aaKnown RBP13.25□□□□□ -0.29
CUX1-202ENST00000292538 YEATS4O95619 227 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 VEGFAP15692 232 aaPredicted RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 SYKP43405 635 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 SLC39A14Q15043 492 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 TEX11Q8IYF3 940 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 FMR1NBQ8N0W7 255 aaPredicted RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 ENGASEQ8NFI3 743 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 CPVLQ9H3G5 476 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 KAT14Q9H8E8 782 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 ANAPC4Q9UJX5 808 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 PCDHB6Q9Y5E3 794 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 PPEF1O14829 653 aaPredicted RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 RAD21O60216 631 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 GOLGA8HP0CJ92 632 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 GRIN1Q05586 938 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 NOM1Q5C9Z4 860 aaKnown RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 RASGRP2Q7LDG7 609 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 NBPF11Q86T75 865 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 ARPP21Q9UBL0 812 aaPredicted RBP13.24□□□□□ -0.29
CUX1-202ENST00000292538 ZKSCAN5Q9Y2L8 839 aa13.24□□□□□ -0.29
CUX1-202ENST00000292538 ATP2B4P23634 1241 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 EIF6P56537 245 aaKnown RBP13.23□□□□□ -0.29
CUX1-202ENST00000292538 ZC3H12CQ9C0D7 883 aaKnown RBP13.23□□□□□ -0.29
CUX1-202ENST00000292538 TMX4Q9H1E5 349 aaPredicted RBP13.23□□□□□ -0.29
CUX1-202ENST00000292538 MROH7-TTC4A0A0A0MT08 1334 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 MYH7P12883 1935 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 BBOX1O75936 387 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 XBP1P17861 261 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 STX1AQ16623 288 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 AOPEPQ8N6M6 819 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 VAT1LQ9HCJ6 419 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 COL5A3P25940 1745 aaPredicted RBP13.23□□□□□ -0.29
CUX1-202ENST00000292538 GSTO1P78417 241 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 KIAA2012Q0VF49 1180 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 SRBD1Q8N5C6 995 aaKnown RBP13.23□□□□□ -0.29
CUX1-202ENST00000292538 JMYQ8N9B5 988 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 NRBP1Q9UHY1 535 aa13.23□□□□□ -0.29
CUX1-202ENST00000292538 U2AF2P26368 475 aaKnown RBP eCLIP13.22□□□□□ -0.291e-7■■■■■ 27.9
CUX1-202ENST00000292538 NLRP5P59047 1200 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 TROAPQ12815 778 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 ZNF174Q15697 407 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 HSP90AA4PQ58FG1 418 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 AXDND1Q5T1B0 1012 aaPredicted RBP13.22□□□□□ -0.29
CUX1-202ENST00000292538 SHC4Q6S5L8 630 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 GPKOWQ92917 476 aaPredicted RBP eCLIP13.22□□□□□ -0.297e-6■□□□□ 10
CUX1-202ENST00000292538 CICQ96RK0 1608 aaPredicted RBP13.22□□□□□ -0.29
CUX1-202ENST00000292538 RGL2O15211 777 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 CTAGE5O15320 804 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 LDHCP07864 332 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 TOB1P50616 345 aaPredicted RBP13.22□□□□□ -0.29
CUX1-202ENST00000292538 PNOCQ13519 176 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 DPCR1Q3MIW9 517 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 CRY2Q49AN0 593 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 EARS2Q5JPH6 523 aaKnown RBP13.22□□□□□ -0.29
CUX1-202ENST00000292538 STAG2Q8N3U4 1231 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 DBNDD1Q9H9R9 158 aa13.22□□□□□ -0.29
CUX1-202ENST00000292538 C12orf60Q5U649 245 aa13.21□□□□□ -0.29
CUX1-202ENST00000292538 DPP8Q6V1X1 898 aaPredicted RBP13.21□□□□□ -0.29
CUX1-202ENST00000292538 HOMER1Q86YM7 354 aa13.21□□□□□ -0.29
CUX1-202ENST00000292538 PARP3Q9Y6F1 533 aa13.21□□□□□ -0.29
CUX1-202ENST00000292538 SLURP2P0DP57 97 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 PTGS1P23219 599 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 RBM5P52756 815 aaKnown RBP eCLIP13.21□□□□□ -0.34e-7■■■□□ 19.1
CUX1-202ENST00000292538 ATP2B2Q01814 1243 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 PNMA1Q8ND90 353 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 CNNM3Q8NE01 707 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 MAP3K14Q99558 947 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 KCNQ5Q9NR82 932 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 ANO10Q9NW15 660 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 KIAA1468Q9P260 1216 aa13.21□□□□□ -0.3
CUX1-202ENST00000292538 R3HCC1Q9Y3T6 440 aaKnown RBP13.21□□□□□ -0.3
CUX1-202ENST00000292538 A0A1W2PQ27 194 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 A0A1W2PQ64 194 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 A0A1W2PQD8 194 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 FOXN1O15353 648 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 CMA1P23946 247 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 PKN1Q16512 942 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 GRAMD1CQ8IYS0 662 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 CEP57L1Q8IYX8 460 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 RASGRP4Q8TDF6 673 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 SHISA4Q96DD7 197 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 IL17RBQ9NRM6 502 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 PTPAQ15257 358 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 LONRF3Q496Y0 759 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 PIK3AP1Q6ZUJ8 805 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 CCDC186Q7Z3E2 898 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 FILIP1Q7Z7B0 1213 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 NLGN1Q8N2Q7 840 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 KRI1Q8N9T8 703 aaKnown RBP13.2□□□□□ -0.3
CUX1-202ENST00000292538 KCNH3Q9ULD8 1083 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.2□□□□□ -0.33e-7■■■□□ 17.9
CUX1-202ENST00000292538 IRS2Q9Y4H2 1338 aa13.2□□□□□ -0.3
CUX1-202ENST00000292538 POLR2DO15514 142 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 KRT2P35908 639 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 RBM43Q6ZSC3 357 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 USP49Q70CQ1 688 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms