RNA–Protein interactions for RNA: ENSMUST00000052648.8

Ccdc28a-201, Transcript of Coiled-coil domain-containing 28A, mousemouse

TSL 1 (best) BASIC

Gene Ccdc28a, Length 2,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-201ENSMUST00000052648 Vmn2r23E9PXI5 849 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Syt1P46096 421 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 CtshP49935 333 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Brip1Q5SXJ3 1174 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tmem130Q6NXM3 419 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Pip5kl1Q6U7H8 395 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tmem59lQ7TNI2 337 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ift74Q8BKE9 600 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Phf20Q8BLG0 1010 aaKnown RBP10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Epc2Q8C0I4 808 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 C8aQ8K182 587 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ccdc47Q9D024 483 aaKnown RBP10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Suclg2Q9Z2I8 433 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Dicer1Q8R418 1916 aa10.39□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Fam71e1A1L3C1 212 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 L1camP11627 1260 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Abhd15Q5F2F2 459 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Stxbp2Q64324 593 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Gpsm2Q8VDU0 679 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 SmapQ9R0P4 181 aaKnown RBP10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Pitpnm2Q6ZPQ6 1335 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Palm3A2TJV2 734 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Stat1P42225 749 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Rfx1P48377 963 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ddx19aQ61655 478 aaKnown RBP10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tll1Q62381 1013 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ccdc148Q6P5U8 527 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tacc1Q6Y685 774 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 VmacQ8BP01 174 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Phf20l1Q8CCJ9 1013 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Mtmr4Q91XS1 1190 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ipo9Q91YE6 1041 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ccdc88aQ5SNZ0 1873 aa10.38□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Elmsan1E9Q2I4 1089 aaKnown RBP10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Terf2O35144 541 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Cyp26a1O55127 497 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Stx8O88983 236 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Me1P06801 572 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Scg2Q03517 617 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 LrmpQ60664 539 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Usp50Q6P8X6 390 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Fsd1Q7TPM6 496 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Rbm28Q8CGC6 750 aaKnown RBP10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 DymQ8CHY3 669 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tomm22Q9CPQ3 142 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Cnpy3Q9DAU1 276 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Acot3Q9QYR7 432 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Atp8b3Q6UQ17 1335 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Sema3fO88632 785 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Myl3P09542 204 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Alppl2P24823 529 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Sept2P42208 361 aaKnown RBP10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Mmp20P57748 482 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Glra4Q61603 456 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 WaplQ65Z40 1200 aaKnown RBP10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Krt74Q6IFZ9 495 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Spata21Q8BHW6 681 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tut1Q8R3F9 869 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Sirt2Q8VDQ8 389 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Trex1Q91XB0 314 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 PdgfdQ925I7 370 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Trmt112Q9DCG9 125 aa10.37□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Brca1P48754 1812 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Usp5P56399 858 aaKnown RBP10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Zfp953Q3UPV7 304 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Senp6Q6P7W0 1132 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tpcn2Q8BWC0 731 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Bola3Q8CEI1 110 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Inpp5bQ8K337 993 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Rufy2Q8R4C2 606 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ttll1Q91V51 423 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Clstn1Q9EPL2 979 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Tmem47Q9JJG6 181 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Usp31E9Q6Y8 1344 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 A430078G23RikE9Q7Y4 484 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Metap2O08663 478 aaKnown RBP10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Cct2P80314 535 aaKnown RBP10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ctdnep1Q3TP92 244 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ckap2Q3V1H1 664 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ube2oQ6ZPJ3 1288 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Mad2l2Q9D752 211 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Telo2Q9DC40 840 aaKnown RBP10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Rcan1Q9JHG6 198 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Col11a1Q61245 1804 aa10.36□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Pagr1bF6V0H0 108 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 FanccP50652 591 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Traf3ip1Q149C2 625 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Zbtb39Q6PDK0 712 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Scfd2Q8BTY8 684 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Iffo2Q8R2V2 512 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Nop2Q922K7 793 aaKnown RBP10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Pagr1aQ99L02 253 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Il21rQ9JHX3 529 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Naaladl2A0A0N4SUJ3 795 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ces1hD3Z298 562 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Eef2kO08796 724 aa10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Calm1P0DP26 149 aaKnown RBP10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Calm2P0DP27 149 aaKnown RBP10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Calm3P0DP28 149 aaKnown RBP10.35□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ttll12Q3UDE2 639 aa10.35□□□□□ -0.75
Retrieved 100 of 22,080 RNA–protein pairs in 14.2 ms