RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Lama5Q61001 3718 aa6.89□□□□□ -1.31
Pcif1-201ENSMUST00000041643 Celsr2Q9R0M0 2920 aa6.87□□□□□ -1.31
Pcif1-201ENSMUST00000041643 Gm9955Q8CEJ8 102 aa6.84□□□□□ -1.31
Pcif1-201ENSMUST00000041643 Sec61bQ9CQS8 96 aaKnown RBP6.84□□□□□ -1.31
Pcif1-201ENSMUST00000041643 Muc5acE9QAQ8 3455 aa6.83□□□□□ -1.32
Pcif1-201ENSMUST00000041643 Fam229aB2KGE5 128 aa6.81□□□□□ -1.32
Pcif1-201ENSMUST00000041643 Gm2310J3QNJ2 377 aa6.81□□□□□ -1.32
Pcif1-201ENSMUST00000041643 Spink7Q6IE32 76 aa6.8□□□□□ -1.32
Pcif1-201ENSMUST00000041643 Rps29P62274 56 aa6.79□□□□□ -1.32
Pcif1-201ENSMUST00000041643 Gm3880A0A1B0GSB3 72 aa6.76□□□□□ -1.33
Pcif1-201ENSMUST00000041643 Chd9Q8BYH8 2885 aa6.76□□□□□ -1.33
Pcif1-201ENSMUST00000041643 Srrm2Q8BTI8 2703 aaKnown RBP6.75□□□□□ -1.33
Pcif1-201ENSMUST00000041643 LrbaQ9ESE1 2856 aa6.75□□□□□ -1.33
Pcif1-201ENSMUST00000041643 Mp68P56379 58 aa6.72□□□□□ -1.33
Pcif1-201ENSMUST00000041643 OtogO55225 2910 aa6.72□□□□□ -1.33
Pcif1-201ENSMUST00000041643 Nf1Q04690 2841 aa6.71□□□□□ -1.33
Pcif1-201ENSMUST00000041643 Tex15F8VPN2 2785 aa6.71□□□□□ -1.34
Pcif1-201ENSMUST00000041643 Pdzd2E9Q1M1 2796 aa6.7□□□□□ -1.34
Pcif1-201ENSMUST00000041643 Ank2Q8C8R3 3898 aa6.7□□□□□ -1.34
Pcif1-201ENSMUST00000041643 FcgbpE9Q0B5 2583 aa6.67□□□□□ -1.34
Pcif1-201ENSMUST00000041643 Svep1A2AVA0 3567 aa6.67□□□□□ -1.34
Pcif1-201ENSMUST00000041643 TgO08710 2766 aa6.67□□□□□ -1.34
Pcif1-201ENSMUST00000041643 Gm20538F6Z9R1 75 aa6.66□□□□□ -1.34
Pcif1-201ENSMUST00000041643 Pla2g10Q9QXX3 151 aa6.66□□□□□ -1.34
Pcif1-201ENSMUST00000041643 ApcQ61315 2845 aa6.63□□□□□ -1.35
Pcif1-201ENSMUST00000041643 Cmya5Q70KF4 3739 aa6.6□□□□□ -1.35
Pcif1-201ENSMUST00000041643 Rpl37Q9D823 97 aa6.59□□□□□ -1.35
Pcif1-201ENSMUST00000041643 CriptO70333 101 aa6.57□□□□□ -1.36
Pcif1-201ENSMUST00000041643 D6Ertd527eA0A0N4SWI3 464 aa6.57□□□□□ -1.36
Pcif1-201ENSMUST00000041643 Gm5965D3Z724 196 aa6.55□□□□□ -1.36
Pcif1-201ENSMUST00000041643 Gm19426M0QWC7 77 aa6.55□□□□□ -1.36
Pcif1-201ENSMUST00000041643 BC029722A0A0N4SW31 51 aa6.54□□□□□ -1.36
Pcif1-201ENSMUST00000041643 Fbn1Q61554 2873 aaKnown RBP6.51□□□□□ -1.37
Pcif1-201ENSMUST00000041643 SmcpP15265 143 aa6.49□□□□□ -1.37
Pcif1-201ENSMUST00000041643 Gm3646F6S692 53 aa6.49□□□□□ -1.37
Pcif1-201ENSMUST00000041643 Camk2n1Q6QWF9 78 aa6.48□□□□□ -1.37
Pcif1-201ENSMUST00000041643 Cox6b2Q80ZN9 88 aa6.45□□□□□ -1.38
Pcif1-201ENSMUST00000041643 2310057N15RikQ9D6T8 200 aa6.42□□□□□ -1.38
Pcif1-201ENSMUST00000041643 Gm9918Q8BUR5 174 aa6.4□□□□□ -1.38
Pcif1-201ENSMUST00000041643 Muc4Q8JZM8 3443 aa6.4□□□□□ -1.39
Pcif1-201ENSMUST00000041643 4933415A04RikQ9D443 101 aa6.39□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Gm10382Q3V0T5 144 aa6.37□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Tenm1Q9WTS4 2731 aa6.36□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Tenm2Q9WTS5 2764 aa6.36□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Helz2E9QAM5 2947 aaKnown RBP6.36□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Romo1P60603 79 aa6.35□□□□□ -1.39
Pcif1-201ENSMUST00000041643 Gm9736A0A1W2P7N1 277 aa6.33□□□□□ -1.4
Pcif1-201ENSMUST00000041643 A930033H14RikG5E8X6 103 aa6.31□□□□□ -1.4
Pcif1-201ENSMUST00000041643 LystP97412 3788 aa6.3□□□□□ -1.4
Pcif1-201ENSMUST00000041643 Csmd2V9GX34 3611 aa6.26□□□□□ -1.41
Pcif1-201ENSMUST00000041643 Dnah14A0A140LIJ4 4489 aa6.19□□□□□ -1.42
Pcif1-201ENSMUST00000041643 1700042G07RikB1AUF7 90 aa6.17□□□□□ -1.42
Pcif1-201ENSMUST00000041643 Huwe1Q7TMY8 4377 aaKnown RBP6.17□□□□□ -1.42
Pcif1-201ENSMUST00000041643 VwfQ8CIZ8 2813 aa6.15□□□□□ -1.43
Pcif1-201ENSMUST00000041643 Krtap19-5O08632 62 aa6.13□□□□□ -1.43
Pcif1-201ENSMUST00000041643 2310079G19RikQ9D6L6 185 aa6.11□□□□□ -1.43
Pcif1-201ENSMUST00000041643 BsnO88737 3942 aa6.09□□□□□ -1.43
Pcif1-201ENSMUST00000041643 Col7a1Q63870 2944 aa6.07□□□□□ -1.44
Pcif1-201ENSMUST00000041643 Gm21887J3QQ04 176 aa6.07□□□□□ -1.44
Pcif1-201ENSMUST00000041643 Gm17416Q30KP4 66 aa6.04□□□□□ -1.44
Pcif1-201ENSMUST00000041643 CubnQ9JLB4 3623 aa6.01□□□□□ -1.45
Pcif1-201ENSMUST00000041643 Xirp2Q4U4S6 3784 aa6.01□□□□□ -1.45
Pcif1-201ENSMUST00000041643 Megf8P60882 2789 aa5.98□□□□□ -1.45
Pcif1-201ENSMUST00000041643 Gm11939A2A592 99 aa5.98□□□□□ -1.45
Pcif1-201ENSMUST00000041643 Gm20537G3UYK7 97 aa5.98□□□□□ -1.45
Pcif1-201ENSMUST00000041643 Dnah17Q69Z23 4481 aa5.93□□□□□ -1.46
Pcif1-201ENSMUST00000041643 2210017I01RikA0A0A6YVV1 95 aa5.92□□□□□ -1.46
Pcif1-201ENSMUST00000041643 Muc6Q80T03 2850 aa5.92□□□□□ -1.46
Pcif1-201ENSMUST00000041643 B930094E09RikQ8C4T2 136 aa5.89□□□□□ -1.47
Pcif1-201ENSMUST00000041643 Gm10318A0A1W2P728 225 aa5.87□□□□□ -1.47
Pcif1-201ENSMUST00000041643 Ndufaf8A2AMZ4 74 aa5.86□□□□□ -1.47
Pcif1-201ENSMUST00000041643 TnxbO35452 4006 aa5.82□□□□□ -1.48
Pcif1-201ENSMUST00000041643 Dnah10D3YYQ8 4591 aa5.81□□□□□ -1.48
Pcif1-201ENSMUST00000041643 Crct1Q6PAI5 102 aa5.81□□□□□ -1.48
Pcif1-201ENSMUST00000041643 Vps13dB1ART2 4390 aa5.77□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Krtap3-2Q9D638 99 aa5.75□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Krtap3-3Q9D7P0 99 aa5.75□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Dnah5Q8VHE6 4621 aa5.74□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Krtap13-1Q8K198 168 aa5.74□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Tnp1P10856 55 aa5.74□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Hspg2Q05793 3707 aaKnown RBP5.73□□□□□ -1.49
Pcif1-201ENSMUST00000041643 Dync2h1Q45VK7 4306 aa5.71□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Dnah6E9Q0B6 4144 aa5.7□□□□□ -1.5
Pcif1-201ENSMUST00000041643 PlecQ9QXS1 4691 aaKnown RBP5.7□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Gm9112A2AI92 75 aa5.7□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Dnah11E9Q7N9 4488 aa5.7□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Gm40193A0A1B0GT39 78 aa5.67□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Gm17402F6Z0L5 76 aa5.67□□□□□ -1.5
Pcif1-201ENSMUST00000041643 Dnah3Q8BW94 4083 aa5.65□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Stard9Q80TF6 4561 aa5.63□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Kmt2aP55200 3966 aa5.62□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Krtap3-1A2A591 98 aa5.61□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Prm2P07978 107 aa5.61□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Dnah9B1AR51 4484 aa5.6□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Dnah1E9Q8T7 4250 aa5.6□□□□□ -1.51
Pcif1-201ENSMUST00000041643 Dnah7bL7N1Y0 4068 aa5.58□□□□□ -1.52
Pcif1-201ENSMUST00000041643 PrkdcP97313 4128 aa5.57□□□□□ -1.52
Pcif1-201ENSMUST00000041643 Dync1h1Q9JHU4 4644 aaKnown RBP5.54□□□□□ -1.52
Pcif1-201ENSMUST00000041643 ApobE9Q414 4505 aa5.53□□□□□ -1.52
Pcif1-201ENSMUST00000041643 Csmd3Q80T79 3707 aa5.52□□□□□ -1.53
Retrieved 100 of 22,080 RNA–protein pairs in 103 ms