RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Sprr1aQ62266 144 aa10.55□□□□□ -0.72
Shh-201ENSMUST00000002708 BaalcQ8VHV1 145 aa10.54□□□□□ -0.72
Shh-201ENSMUST00000002708 Gm37389A0A0A6YW05 95 aa10.53□□□□□ -0.72
Shh-201ENSMUST00000002708 Dnah17Q69Z23 4481 aa10.53□□□□□ -0.72
Shh-201ENSMUST00000002708 Dmac1Q9CQ00 111 aa10.53□□□□□ -0.72
Shh-201ENSMUST00000002708 Gm11627A6PWP4 55 aa10.52□□□□□ -0.73
Shh-201ENSMUST00000002708 Dnah1E9Q8T7 4250 aa10.52□□□□□ -0.73
Shh-201ENSMUST00000002708 Defa28D3Z1V9 94 aa10.51□□□□□ -0.73
Shh-201ENSMUST00000002708 Gm17521F6QAC8 156 aa10.51□□□□□ -0.73
Shh-201ENSMUST00000002708 Wfdc6bF6ULY1 148 aa10.51□□□□□ -0.73
Shh-201ENSMUST00000002708 Igkv3-12A0A140T8P0 119 aa10.5□□□□□ -0.73
Shh-201ENSMUST00000002708 Igkv8-19A0A0G2JFN8 121 aa10.5□□□□□ -0.73
Shh-201ENSMUST00000002708 Obox2E9PXV9 151 aa10.5□□□□□ -0.73
Shh-201ENSMUST00000002708 1700018G05RikA0A1B0GSI2 66 aa10.49□□□□□ -0.73
Shh-201ENSMUST00000002708 Vpreb3D3Z6J4 130 aa10.49□□□□□ -0.73
Shh-201ENSMUST00000002708 UqcrqQ9CQ69 82 aa10.49□□□□□ -0.73
Shh-201ENSMUST00000002708 Gm9508A0A1W2P7W0 230 aa10.48□□□□□ -0.73
Shh-201ENSMUST00000002708 Wfdc13Q5DQQ6 81 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 Defb10Q8R2I8 73 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 Igkv3-4A0A140T8Q4 119 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 Ube2bP63147 152 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 A930002H24RikQ8C8Y3 163 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 Megf8P60882 2789 aa10.47□□□□□ -0.73
Shh-201ENSMUST00000002708 Mrpl55Q9CZ83 127 aa10.46□□□□□ -0.73
Shh-201ENSMUST00000002708 Prol1E9PYQ4 312 aa10.43□□□□□ -0.74
Shh-201ENSMUST00000002708 Gm10337F7DEP7 55 aa10.42□□□□□ -0.74
Shh-201ENSMUST00000002708 Coa6Q8BGD8 79 aa10.41□□□□□ -0.74
Shh-201ENSMUST00000002708 Gm21886J3QJU9 214 aa10.4□□□□□ -0.74
Shh-201ENSMUST00000002708 Spata3Q9D9T6 193 aa10.39□□□□□ -0.75
Shh-201ENSMUST00000002708 Reg3aO09037 175 aa10.38□□□□□ -0.75
Shh-201ENSMUST00000002708 2310061N02RikQ9D6S9 174 aa10.38□□□□□ -0.75
Shh-201ENSMUST00000002708 Muc6Q80T03 2850 aa10.36□□□□□ -0.75
Shh-201ENSMUST00000002708 FasnP19096 2504 aaKnown RBP10.35□□□□□ -0.75
Shh-201ENSMUST00000002708 Gm10197F6QEY5 67 aa10.35□□□□□ -0.75
Shh-201ENSMUST00000002708 Spint4Q9D263 159 aa10.35□□□□□ -0.75
Shh-201ENSMUST00000002708 Rpl37aP61514 92 aa10.34□□□□□ -0.75
Shh-201ENSMUST00000002708 Stab2Q8R4U0 2559 aa10.33□□□□□ -0.76
Shh-201ENSMUST00000002708 Igsf10Q3V1M1 2594 aa10.33□□□□□ -0.76
Shh-201ENSMUST00000002708 Odf3bQ5M8M2 238 aa10.32□□□□□ -0.76
Shh-201ENSMUST00000002708 Gm37013Q8K491 104 aa10.32□□□□□ -0.76
Shh-201ENSMUST00000002708 SycnQ8VCK7 134 aa10.32□□□□□ -0.76
Shh-201ENSMUST00000002708 U90926O08546 118 aa10.31□□□□□ -0.76
Shh-201ENSMUST00000002708 Fam104aA2A6P4 185 aa10.31□□□□□ -0.76
Shh-201ENSMUST00000002708 Tenm2Q9WTS5 2764 aa10.29□□□□□ -0.76
Shh-201ENSMUST00000002708 B9d2Q3UK10 175 aa10.29□□□□□ -0.76
Shh-201ENSMUST00000002708 Gm10837Q3UTT8 145 aa10.29□□□□□ -0.76
Shh-201ENSMUST00000002708 Coa5Q99M07 74 aa10.29□□□□□ -0.76
Shh-201ENSMUST00000002708 Cdc42se1Q8BHL7 80 aa10.29□□□□□ -0.76
Shh-201ENSMUST00000002708 Zcchc13Q9D548 170 aa10.28□□□□□ -0.76
Shh-201ENSMUST00000002708 Gm28230A0A0A0MQ91 144 aa10.28□□□□□ -0.76
Shh-201ENSMUST00000002708 Huwe1Q7TMY8 4377 aaKnown RBP10.27□□□□□ -0.77
Shh-201ENSMUST00000002708 Igkv3-10A0A0G2JGN0 119 aa10.27□□□□□ -0.77
Shh-201ENSMUST00000002708 Bean1Q9EQG5 255 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 Dnah11E9Q7N9 4488 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 H2al1bA0A087WP11 105 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 AW011738F6S7Q2 159 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 Gm17349F7BGH6 99 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 H2al1kJ3QP08 105 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 H2al1eQ810S6 105 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 1700074P13RikQ9D9G7 251 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 H2al1mQ9DAD9 105 aa10.26□□□□□ -0.77
Shh-201ENSMUST00000002708 Dnah9B1AR51 4484 aa10.25□□□□□ -0.77
Shh-201ENSMUST00000002708 Igkv3-7A0A0G2JE31 119 aa10.25□□□□□ -0.77
Shh-201ENSMUST00000002708 Dync2h1Q45VK7 4306 aa10.24□□□□□ -0.77
Shh-201ENSMUST00000002708 Gm12353A2AGJ4 60 aa10.24□□□□□ -0.77
Shh-201ENSMUST00000002708 Phf5aP83870 110 aaKnown RBP10.24□□□□□ -0.77
Shh-201ENSMUST00000002708 AI606181Q8C7B9 129 aa10.24□□□□□ -0.77
Shh-201ENSMUST00000002708 A0A286YE49 62 aa10.23□□□□□ -0.77
Shh-201ENSMUST00000002708 TnxbO35452 4006 aa10.23□□□□□ -0.77
Shh-201ENSMUST00000002708 Pkd1l1Q8R526 2615 aa10.23□□□□□ -0.77
Shh-201ENSMUST00000002708 Atox1O08997 68 aaKnown RBP10.22□□□□□ -0.77
Shh-201ENSMUST00000002708 Gm28374F6SG70 93 aa10.2□□□□□ -0.78
Shh-201ENSMUST00000002708 Gm10139O88245 57 aa10.19□□□□□ -0.78
Shh-201ENSMUST00000002708 Nupr2Q497P3 102 aa10.19□□□□□ -0.78
Shh-201ENSMUST00000002708 Ube2aQ9Z255 152 aa10.18□□□□□ -0.78
Shh-201ENSMUST00000002708 Gm10267M0QWD8 85 aa10.15□□□□□ -0.78
Shh-201ENSMUST00000002708 Wfdc10Q3V2J9 124 aa10.15□□□□□ -0.78
Shh-201ENSMUST00000002708 1700012A03RikQ9DAF1 130 aa10.15□□□□□ -0.79
Shh-201ENSMUST00000002708 Fras1Q80T14 4010 aa10.13□□□□□ -0.79
Shh-201ENSMUST00000002708 PrkdcP97313 4128 aa10.13□□□□□ -0.79
Shh-201ENSMUST00000002708 Defb9Q8R2I6 67 aa10.13□□□□□ -0.79
Shh-201ENSMUST00000002708 Plac8Q9JI48 112 aa10.13□□□□□ -0.79
Shh-201ENSMUST00000002708 Defb38Q7TNV7 63 aa10.12□□□□□ -0.79
Shh-201ENSMUST00000002708 Gm4707V9GXN5 68 aa10.12□□□□□ -0.79
Shh-201ENSMUST00000002708 Chtf8P0CG14 533 aa10.11□□□□□ -0.79
Shh-201ENSMUST00000002708 Gm9507D3Z5T3 223 aa10.1□□□□□ -0.79
Shh-201ENSMUST00000002708 Chchd10Q7TNL9 138 aa10.08□□□□□ -0.8
Shh-201ENSMUST00000002708 6030445D17RikE9Q8F9 148 aa10.06□□□□□ -0.8
Shh-201ENSMUST00000002708 Gm2310J3QNJ2 377 aa10.06□□□□□ -0.8
Shh-201ENSMUST00000002708 Igkv3-5A0A140T8M6 119 aa10.03□□□□□ -0.8
Shh-201ENSMUST00000002708 Gm10642Q3TWM1 71 aa10.02□□□□□ -0.8
Shh-201ENSMUST00000002708 PlecQ9QXS1 4691 aaKnown RBP10.01□□□□□ -0.81
Shh-201ENSMUST00000002708 Phxr4P15974 95 aa9.99□□□□□ -0.81
Shh-201ENSMUST00000002708 Gm27235Q3UW50 83 aa9.99□□□□□ -0.81
Shh-201ENSMUST00000002708 4933415A04RikQ9D443 101 aa9.97□□□□□ -0.81
Shh-201ENSMUST00000002708 Anapc11Q9CPX9 84 aa9.97□□□□□ -0.81
Shh-201ENSMUST00000002708 Gm10065F6TJM2 114 aa9.96□□□□□ -0.81
Shh-201ENSMUST00000002708 Gm9918Q8BUR5 174 aa9.96□□□□□ -0.81
Shh-201ENSMUST00000002708 Krtap29-1A2A5X4 342 aa9.93□□□□□ -0.82
Shh-201ENSMUST00000002708 Dnah5Q8VHE6 4621 aa9.93□□□□□ -0.82
Retrieved 100 of 22,080 RNA–protein pairs in 7.6 ms