RNA–Protein interactions for RNA: ENSMUST00000093490.8

Clcn3-203, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 5,518 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-203ENSMUST00000093490 Defb50Q6TU36 73 aa10.55□□□□□ -0.72
Clcn3-203ENSMUST00000093490 Gm10999F6Q4M4 69 aa10.55□□□□□ -0.72
Clcn3-203ENSMUST00000093490 Phf5aP83870 110 aaKnown RBP10.55□□□□□ -0.72
Clcn3-203ENSMUST00000093490 A930002H24RikQ8C8Y3 163 aa10.54□□□□□ -0.72
Clcn3-203ENSMUST00000093490 Hcfc1Q61191 2045 aaKnown RBP10.54□□□□□ -0.72
Clcn3-203ENSMUST00000093490 4930507D05RikQ8C9C9 103 aa10.53□□□□□ -0.72
Clcn3-203ENSMUST00000093490 Sprr1bQ62267 153 aa10.51□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Q8BT88 171 aa10.5□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Rpl37aP61514 92 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Gpr15lA0A0B4J1N3 78 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Golgb1E9PVZ8 3238 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Setd2E9Q5F9 2537 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Eif4ebp3Q80VV3 101 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 MtorQ9JLN9 2549 aa10.49□□□□□ -0.73
Clcn3-203ENSMUST00000093490 AY074887Q8R5F9 132 aa10.46□□□□□ -0.73
Clcn3-203ENSMUST00000093490 Krtap11-1E9Q2E9 183 aa10.46□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Lypd5Q9D7Z7 256 aa10.46□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Gm7276Q3TYW4 209 aa10.45□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Phxr4P15974 95 aa10.45□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Bahcc1Q3UHR0 2643 aa10.45□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Sprr4Q8CGN8 76 aa10.44□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Ankrd17Q99NH0 2603 aaKnown RBP10.44□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Gm10643Q3URG9 111 aa10.43□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Alms1Q8K4E0 3251 aa10.42□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Abca12E9Q876 2595 aa10.4□□□□□ -0.74
Clcn3-203ENSMUST00000093490 Unc79Q0KK59 2596 aa10.39□□□□□ -0.75
Clcn3-203ENSMUST00000093490 Fam168bQ80XQ8 194 aa10.39□□□□□ -0.75
Clcn3-203ENSMUST00000093490 RetnlbQ99P86 105 aa10.38□□□□□ -0.75
Clcn3-203ENSMUST00000093490 Uqcr11Q9CPX8 56 aa10.38□□□□□ -0.75
Clcn3-203ENSMUST00000093490 Spaca4Q80ZQ0 127 aa10.35□□□□□ -0.75
Clcn3-203ENSMUST00000093490 Gm5617Q91VN2 117 aa10.35□□□□□ -0.75
Clcn3-203ENSMUST00000093490 C530025M09RikF6RGA8 229 aa10.33□□□□□ -0.76
Clcn3-203ENSMUST00000093490 Q8BGJ3 129 aa10.31□□□□□ -0.76
Clcn3-203ENSMUST00000093490 Gm11213A0A1B0GR83 88 aa10.3□□□□□ -0.76
Clcn3-203ENSMUST00000093490 CnbpP53996 178 aaKnown RBP10.3□□□□□ -0.76
Clcn3-203ENSMUST00000093490 A330070K13RikQ8CA53 115 aa10.29□□□□□ -0.76
Clcn3-203ENSMUST00000093490 Gm42715A0A087WP63 3095 aaKnown RBP10.28□□□□□ -0.76
Clcn3-203ENSMUST00000093490 Defb1P56386 69 aa10.27□□□□□ -0.77
Clcn3-203ENSMUST00000093490 PolqQ8CGS6 2544 aa10.27□□□□□ -0.77
Clcn3-203ENSMUST00000093490 Mp68P56379 58 aa10.26□□□□□ -0.77
Clcn3-203ENSMUST00000093490 Cep192E9Q4Y4 2514 aaKnown RBP10.26□□□□□ -0.77
Clcn3-203ENSMUST00000093490 PcntP48725 2898 aa10.2□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Defb9Q8R2I6 67 aa10.19□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Fam104aA2A6P4 185 aa10.18□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Zcchc13Q9D548 170 aa10.18□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Zfp292Q9Z2U2 2698 aa10.18□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Gm3233E9Q2H5 230 aa10.16□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Cypt15B1AXS0 87 aa10.15□□□□□ -0.78
Clcn3-203ENSMUST00000093490 Phxr5P08399 672 aa10.15□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Ep400Q8CHI8 3072 aaKnown RBP10.14□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Chtf8P0CG14 533 aa10.12□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Fam229bQ8CF36 80 aa10.11□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Myo18bE9PV66 2605 aa10.11□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Plac8Q9JI48 112 aa10.09□□□□□ -0.79
Clcn3-203ENSMUST00000093490 CicQ924A2 2510 aa10.09□□□□□ -0.79
Clcn3-203ENSMUST00000093490 Gm10065F6TJM2 114 aa10.08□□□□□ -0.8
Clcn3-203ENSMUST00000093490 Lama2Q60675 3118 aaKnown RBP10.07□□□□□ -0.8
Clcn3-203ENSMUST00000093490 Lelp1Q9DAE3 120 aa10.07□□□□□ -0.8
Clcn3-203ENSMUST00000093490 Gm26620Q9CY65 116 aa10.05□□□□□ -0.8
Clcn3-203ENSMUST00000093490 FlnbQ80X90 2602 aaKnown RBP10.04□□□□□ -0.8
Clcn3-203ENSMUST00000093490 NbdyA0A0N4SUI7 68 aa10.02□□□□□ -0.81
Clcn3-203ENSMUST00000093490 Cypt14J3QPF7 87 aa9.99□□□□□ -0.81
Clcn3-203ENSMUST00000093490 CenpfE9Q3P4 2997 aaKnown RBP9.98□□□□□ -0.81
Clcn3-203ENSMUST00000093490 UtrnE9Q6R7 3430 aa9.97□□□□□ -0.81
Clcn3-203ENSMUST00000093490 Gm21798J3QNU5 87 aa9.97□□□□□ -0.81
Clcn3-203ENSMUST00000093490 Rnase13Q5GAM7 153 aa9.97□□□□□ -0.81
Clcn3-203ENSMUST00000093490 2310034C09RikQ9D746 214 aa9.93□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Gm7138L7N2C3 230 aa9.93□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Gm3238W4VSP7 230 aa9.93□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Usp9yF8VPU6 2556 aa9.93□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Gm20538F6Z9R1 75 aa9.91□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Anapc11Q9CPX9 84 aa9.91□□□□□ -0.82
Clcn3-203ENSMUST00000093490 FlnaQ8BTM8 2647 aaKnown RBP9.91□□□□□ -0.82
Clcn3-203ENSMUST00000093490 FasnP19096 2504 aaKnown RBP9.9□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Gm9821Q8K076 103 aa9.9□□□□□ -0.82
Clcn3-203ENSMUST00000093490 Ankrd11E9Q4F7 2643 aa9.89□□□□□ -0.83
Clcn3-203ENSMUST00000093490 Gm10320E9PW43 113 aa9.88□□□□□ -0.83
Clcn3-203ENSMUST00000093490 Smim29Q8R043 75 aa9.87□□□□□ -0.83
Clcn3-203ENSMUST00000093490 Hectd1Q69ZR2 2618 aaKnown RBP9.87□□□□□ -0.83
Clcn3-203ENSMUST00000093490 AtrQ9JKK8 2635 aa9.86□□□□□ -0.83
Clcn3-203ENSMUST00000093490 Gm9195A0A140LHT4 2805 aa9.85□□□□□ -0.83
Clcn3-203ENSMUST00000093490 CriptO70333 101 aa9.83□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Gm9955Q8CEJ8 102 aa9.83□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Dnah12Q3V0Q1 3086 aa9.83□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Cep350E9Q309 3095 aa9.82□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Nbeal1E9PYP2 2688 aa9.82□□□□□ -0.84
Clcn3-203ENSMUST00000093490 TrioQ0KL02 3102 aa9.81□□□□□ -0.84
Clcn3-203ENSMUST00000093490 6030445D17RikE9Q8F9 148 aa9.81□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Gm17349F7BGH6 99 aa9.81□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Gm10139O88245 57 aa9.78□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Myo15bI7HPW8 3033 aa9.77□□□□□ -0.84
Clcn3-203ENSMUST00000093490 Gm7137J3QMW1 236 aa9.77□□□□□ -0.85
Clcn3-203ENSMUST00000093490 Cystm1Q8K353 104 aa9.77□□□□□ -0.85
Clcn3-203ENSMUST00000093490 Odf3bQ5M8M2 238 aa9.75□□□□□ -0.85
Clcn3-203ENSMUST00000093490 Sprr1aQ62266 144 aa9.73□□□□□ -0.85
Clcn3-203ENSMUST00000093490 Dmbt1Q60997 2085 aa9.73□□□□□ -0.85
Clcn3-203ENSMUST00000093490 Gm3880A0A1B0GSB3 72 aa9.71□□□□□ -0.86
Clcn3-203ENSMUST00000093490 Itpr1P11881 2749 aa9.7□□□□□ -0.86
Clcn3-203ENSMUST00000093490 Nsd1O88491 2588 aaKnown RBP9.7□□□□□ -0.86
Clcn3-203ENSMUST00000093490 Gm4491E0CX42 125 aa9.69□□□□□ -0.86
Retrieved 100 of 22,080 RNA–protein pairs in 52.9 ms