RNA–Protein interactions for RNA: ENSMUST00000047835.7

Scaf11-201, Transcript of SR-related CTD-associated factor 11, mousemouse

TSL 5 BASIC

Gene Scaf11, Length 5,766 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf11-201ENSMUST00000047835 Igkv1-122A0A140T8M9 119 aa13.9□□□□□ -0.18
Scaf11-201ENSMUST00000047835 Rpl32P62911 135 aaKnown RBP13.9□□□□□ -0.18
Scaf11-201ENSMUST00000047835 CrygcQ61597 174 aa13.9□□□□□ -0.18
Scaf11-201ENSMUST00000047835 Defb2P82020 71 aa13.9□□□□□ -0.18
Scaf11-201ENSMUST00000047835 Trav13-4-dv7A0A075B6C2 110 aa13.89□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Defa25Q5G864 92 aa13.89□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm14137Q8CE97 175 aa13.89□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Igkv4-74A0A0B4J1I3 119 aa13.89□□□□□ -0.19
Scaf11-201ENSMUST00000047835 7420426K07RikQ3UX66 186 aa13.89□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Clec4b2Q67DU8 208 aa13.88□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Defb47Q30KN1 79 aa13.88□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Ebi3O35228 228 aa13.88□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Spink10Q8CAC8 162 aa13.87□□□□□ -0.19
Scaf11-201ENSMUST00000047835 1700012A03RikQ9DAF1 130 aa13.87□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Trav13-2A0A075B649 110 aa13.87□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm10542F6XDR3 90 aa13.87□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm10518F6UQQ9 182 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm10226O88253 85 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Q9D131 166 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Spry2Q9QXV8 315 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Timm17aQ9Z0V8 171 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 DscamQ9ERC8 2013 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Lst1O08843 95 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 C920008G01RikA0A0B4J1N1 112 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm6899Q3USS0 134 aa13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Tet2Q4JK59 1912 aaKnown RBP13.86□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Mrpl35Q9CQL6 188 aa13.85□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm5878E9PUB3 99 aa13.85□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Wfdc2Q9DAU7 174 aa13.85□□□□□ -0.19
Scaf11-201ENSMUST00000047835 B230359F08RikA0A0B4J1K3 109 aa13.85□□□□□ -0.19
Scaf11-201ENSMUST00000047835 PlaurP35456 327 aa13.85□□□□□ -0.19
Scaf11-201ENSMUST00000047835 NpyP57774 97 aa13.84□□□□□ -0.19
Scaf11-201ENSMUST00000047835 P01659 112 aa13.84□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Ighv2-3A0A075B696 115 aa13.84□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Gm17359A0A0G2JEB7 487 aa13.84□□□□□ -0.19
Scaf11-201ENSMUST00000047835 Igkv1-88A0A140T8N1 120 aa13.83□□□□□ -0.19
Scaf11-201ENSMUST00000047835 P01674 108 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Camk2n2Q78WH7 79 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Ighv1-82A0A0G2JEU7 117 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Glrp1E9Q9S8 174 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Notch3Q61982 2318 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Trav3-4A0A075B654 114 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Odf3Q920N1 254 aa13.83□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Ubl5Q9EPV8 73 aa13.82□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Eml6Q5SQM0 1958 aa13.82□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Fam241bQ9D882 120 aa13.82□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Ndufa4l2Q4FZG9 87 aa13.82□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Cox7b2Q9D2H1 82 aa13.82□□□□□ -0.2
Scaf11-201ENSMUST00000047835 E130114P18RikF6S0S7 154 aa13.81□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Ccl25O35903 144 aa13.81□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Igkv8-26A0A075B5N5 123 aa13.81□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Trav13-1A0A075B644 110 aa13.81□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Plscr4P58196 326 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Trav9n-4A0A075B631 113 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 1520401A03RikA0A0J9YVH6 598 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Gm17472A0A075B683 117 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 FshbQ60687 130 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 MifP34884 115 aaKnown RBP13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Q9D8Q6 235 aa13.8□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Rif1Q6PR54 2419 aaKnown RBP13.79□□□□□ -0.2
Scaf11-201ENSMUST00000047835 Gm42674D3YUT9 64 aa13.79□□□□□ -0.2
Scaf11-201ENSMUST00000047835 DysfQ9ESD7 2090 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm10735Q3US96 136 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Tmem223Q9CQE2 199 aaKnown RBP13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Ighv1-75A0A075B5Y2 117 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Fxyd5P97808 178 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm12689Q8BQU9 117 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm9936Q8C864 160 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm10251J3QPM5 127 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm2916Q9D9B9 127 aa13.76□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Ighv1-85A0A075B5Y6 117 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Defa21Q8C1P2 93 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Ighv1-63A0A075B5X2 117 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm5468Q8C3D3 155 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 U90926O08546 118 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Adamts20P59511 1906 aa13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Rpl18aP62717 176 aaKnown RBP13.75□□□□□ -0.21
Scaf11-201ENSMUST00000047835 PrlhG3UWC3 86 aa13.74□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Snai3Q9QY31 287 aa13.74□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Ociad2Q9D8W7 154 aa13.74□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Tns1E9Q0S6 1888 aaKnown RBP13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Ighv1-11A0A0A6YWI9 117 aa13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm10647E9Q8X0 124 aa13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Trav13n-2A0A0G2JF93 110 aa13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Igkv4-58A0A0G2JGI6 119 aa13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Fam222aQ6PGH4 453 aa13.73□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Smrp1Q2MH31 260 aa13.72□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Trav7-6A0A075B640 112 aa13.72□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Gm17577J3QNF7 156 aa13.72□□□□□ -0.21
Scaf11-201ENSMUST00000047835 A130051J06RikQ8CAU1 227 aa13.72□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Znf239P24399 201 aa13.71□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Inafm2A0A1L1STD6 152 aa13.71□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Klk12B2RVZ0 247 aa13.71□□□□□ -0.21
Scaf11-201ENSMUST00000047835 Defa27F2Z403 93 aa13.71□□□□□ -0.22
Scaf11-201ENSMUST00000047835 Brwd1Q921C3 2304 aa13.7□□□□□ -0.22
Scaf11-201ENSMUST00000047835 B9d2Q3UK10 175 aa13.7□□□□□ -0.22
Scaf11-201ENSMUST00000047835 Fhl2O70433 279 aa13.7□□□□□ -0.22
Scaf11-201ENSMUST00000047835 Rbmy1bQ60990 380 aa13.7□□□□□ -0.22
Scaf11-201ENSMUST00000047835 Iglc1A0A0G2JE99 106 aa13.7□□□□□ -0.22
Scaf11-201ENSMUST00000047835 Gm8439G3UWA7 96 aa13.7□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 54.4 ms