RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Synj2bpQ9D6K5 145 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Zfand3Q497H0 227 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Wipf1Q8K1I7 493 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Cd99Q8VCN6 175 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Mpv17l2Q8VIK2 200 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Wfdc15bQ9JHY4 80 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Sorl1O88307 2215 aaKnown RBP12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm26602M0QWA4 95 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Znf740Q6NZQ6 180 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Mrpl55Q9CZ83 127 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ighv1-50A0A075B5W1 117 aa12□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Trbv14A0A140T8L9 115 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P06330 118 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P0C913 63 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 A530064D06RikQ8BNV8 229 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Spag11Q8K4N2 71 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01756 117 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01757 117 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01786 117 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01896 185 aa11.99□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Rif1Q6PR54 2419 aaKnown RBP11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 PtprbB2RU80 1998 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01750 117 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Igkv2-137A0A0B4J1H6 120 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Igkv3-9A0A140T8P4 119 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 E130116L18RikQ8BMV6 101 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 BB014433Q8C5R5 389 aa11.98□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm7173A0A0G2JEB6 3132 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Lgals4Q8K419 326 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm9573F7C950 1606 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Lmo4P61969 165 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ang4Q3TMQ6 144 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Morn5Q9DAI9 170 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Rnf114Q9ET26 229 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Ighv1-52A0A0A6YXC3 117 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Iglc1A0A0G2JE99 106 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01843 105 aa11.97□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm815Q3UWS2 115 aa11.96□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Gm3285A0A1W2P7U0 201 aa11.96□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 P01738 130 aa11.96□□□□□ -0.49
Ccdc88b-201ENSMUST00000113440 Inafm2A0A1L1STD6 152 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Cox17P56394 63 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 UrahQ9CRB3 118 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Igkv4-68A0A0B4J1I7 117 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Mrps12O35680 139 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Rpl32P62911 135 aaKnown RBP11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Leap2Q91V13 76 aa11.96□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 P01748 117 aa11.95□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Cdh23Q99PF4 3354 aa11.95□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Trav9-2A0A075B647 113 aa11.95□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Trav9-4A0A0B4J1K2 113 aa11.95□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Ighv1-12A0A0A6YXJ9 117 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Trav14d-3-dv8A0A075B619 120 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Defa27F2Z403 93 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Pla2g2cP48076 150 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Gatd1Q8BFQ8 220 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Olfr311Q5NC59 308 aa11.94□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Prune2Q52KR3 3084 aa11.93□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 7420426K07RikQ3UX66 186 aa11.93□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Kiaa1549Q68FD9 1940 aa11.93□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Spink10Q8CAC8 162 aa11.93□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Gm12689Q8BQU9 117 aa11.92□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Gm9936Q8C864 160 aa11.92□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Reg3dQ9QUS9 175 aa11.92□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Col12a1Q60847 3120 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Dad1P61804 113 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Rbx1P62878 108 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Zmat4Q8BZ94 229 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Igkv4-59A0A0B4J1I8 117 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Tmem263Q9DAM7 115 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Gm17359A0A0G2JEB7 487 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Fam110dQ80X91 271 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Defa21Q8C1P2 93 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Atp6v0e2Q91XE7 81 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Sdk1Q3UH53 2193 aa11.91□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Igkv4-57A0A0A6YYE7 117 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Igkv4-61A0A0G2JH00 117 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 4930415O20RikQ8CDT5 131 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Pfn2Q9JJV2 140 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Tnrc18Q80WC3 2878 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Ighv2-6A0A075B6A7 116 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Spata25Q9DA57 226 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Hoxd3P09027 433 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Crlf1Q9JM58 425 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Jbts17Q8CE72 3214 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Col27a1Q5QNQ9 1845 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 Gm9925F6T2U3 160 aa11.9□□□□□ -0.5
Ccdc88b-201ENSMUST00000113440 E130218I03RikA0A0U1RNU5 63 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Brwd1Q921C3 2304 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Chd8Q09XV5 2582 aaKnown RBP11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 DscamQ9ERC8 2013 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Trbv13-1A0A0B4J1P8 112 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Rbmy1bQ60990 380 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Gm17455G3UW87 128 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Q9CX25 107 aa11.89□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Igkv8-16A0A0G2JDG9 121 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Gm7257D3YX25 99 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 P01837 106 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 Foxi2Q3I5G5 311 aa11.88□□□□□ -0.51
Ccdc88b-201ENSMUST00000113440 B230307C23RikQ8BLB2 64 aa11.88□□□□□ -0.51
Retrieved 100 of 22,080 RNA–protein pairs in 65.8 ms