RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	GPR1	Q12361	961 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	HSH49	Q99181	213 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	ISN1	Q99312	450 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	SNF3	P10870	884 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	RRP7	P25368	297 aa	Predicted RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	ELM1	P32801	640 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	MTH1	P35198	433 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	MIC60	P36112	540 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	SRL3	P36167	246 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	BIT2	P38346	545 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	TOM71	P38825	639 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	RTS1	P38903	757 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	VHR1	P40522	640 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	EPL1	P43572	832 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	TAD1	P53065	400 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	SFB2	P53953	876 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	YMR102C	Q03177	834 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	LRS4	Q04087	347 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	XYL2	Q07993	356 aa		4.73	□□□□□ -1.65
CDC48	YDL126C	TY1A-NL1	Q12391	440 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	RPS21B	Q3E754	87 aa	Known RBP	4.73	□□□□□ -1.65
CDC48	YDL126C	PER1	P25625	357 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	DPH5	P32469	300 aa	Predicted RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	YSC84	P32793	468 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	MRPL40	P36534	297 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	RFC5	P38251	354 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	YJR039W	P47107	1121 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	GUD1	Q07729	489 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	ADY3	Q07732	790 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	DNL4	Q08387	944 aa	Predicted RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	SMF3	Q12078	473 aa	Predicted RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	CHO2	P05374	869 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	CTT1	P06115	562 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	FBP1	P09201	348 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	APE1	P14904	514 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	GUK1	P15454	187 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	THR1	P17423	357 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	HNM1	P19807	563 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	DBP3	P20447	523 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	RDS1	P25611	832 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	MRE11	P32829	692 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	DID4	P36108	232 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	AKR1	P39010	764 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	PXA1	P41909	870 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	PUS4	P48567	403 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	FOL2	P51601	243 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	RBG2	P53295	368 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	HDA1	P53973	706 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	SPC19	Q03954	165 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	YLR287C	Q05881	355 aa		4.72	□□□□□ -1.65
CDC48	YDL126C	RIB2	Q12362	591 aa	Known RBP	4.72	□□□□□ -1.65
CDC48	YDL126C	FRS2	P15625	503 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	MBR1	P23493	339 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	RPN2	P32565	945 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	RPT5	P33297	434 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	PXA2	P34230	853 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	UIP5	P36137	443 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	MAL33	P38157	468 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	JEM1	P40358	645 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	MAD3	P47074	515 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	NOP9	P47077	666 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	EAF6	P47128	113 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	DAM1	P53267	343 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	HLR1	Q04429	423 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	DBP9	Q06218	594 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	CHS5	Q12114	671 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	YIL002W-A	Q3E7Z5	69 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	CDC37	P06101	506 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	PET494	P07390	489 aa	Predicted RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	CDC26	P14724	124 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	OLE1	P21147	510 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	DAL7	P21826	554 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	BMH2	P34730	273 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	PSY4	P38193	441 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	YBR225W	P38321	900 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	TIF5	P38431	405 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	RPN10	P38886	268 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	GSM1	P42950	618 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	CNM67	P53865	581 aa	Known RBP	4.71	□□□□□ -1.66
CDC48	YDL126C	YPL071C	Q02864	156 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	FMP30	Q02883	468 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	YML108W	Q03759	105 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	VHS3	Q08438	674 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	THI21	Q08975	551 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	YDL176W	Q12027	708 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	ATG9	Q12142	997 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	HAL9	Q12180	1030 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	RAD61	Q99359	647 aa		4.71	□□□□□ -1.66
CDC48	YDL126C	NFS1	P25374	497 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	MYO3	P36006	1272 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	OAF3	P36023	863 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	UBP13	P38187	747 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	GND1	P38720	489 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	MET12	P46151	657 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	MRPL19	P53875	158 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	SPO19	Q03029	223 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	NHX1	Q04121	633 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	YOR223W	Q12015	292 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	RPB4	P20433	221 aa	Predicted RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	HCA4	P20448	770 aa	Known RBP	4.7	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms