RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W GAL4P04386 881 aa1.32□□□□□ -2.2
CDC39YCR093W FBP1P09201 348 aa1.32□□□□□ -2.2
CDC39YCR093W OAR1P35731 278 aa1.32□□□□□ -2.2
CDC39YCR093W VPS8P39702 1274 aa1.32□□□□□ -2.2
CDC39YCR093W HIS6P40545 261 aa1.32□□□□□ -2.2
CDC39YCR093W GSM1P42950 618 aa1.32□□□□□ -2.2
CDC39YCR093W YGR066CP53242 292 aa1.32□□□□□ -2.2
CDC39YCR093W YNL144CP53907 740 aa1.32□□□□□ -2.2
CDC39YCR093W APL4Q12028 832 aa1.32□□□□□ -2.2
CDC39YCR093W RIB2Q12362 591 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W YEL076C-AP0CX16 216 aa1.32□□□□□ -2.2
CDC39YCR093W YLR464WP0CX17 216 aa1.32□□□□□ -2.2
CDC39YCR093W PTP1P25044 335 aa1.32□□□□□ -2.2
CDC39YCR093W CBP4P37267 147 aa1.32□□□□□ -2.2
CDC39YCR093W YEL076CP39971 216 aa1.32□□□□□ -2.2
CDC39YCR093W GPP2P40106 250 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W PEX8P53248 589 aa1.32□□□□□ -2.2
CDC39YCR093W RBG2P53295 368 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W COQ6P53318 479 aa1.32□□□□□ -2.2
CDC39YCR093W VPS9P54787 451 aa1.32□□□□□ -2.2
CDC39YCR093W SMX3P54999 86 aaPredicted RBP1.32□□□□□ -2.2
CDC39YCR093W SNF1P06782 633 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W SEC53P07283 254 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W PRE10P21242 288 aaKnown RBP RIP-Chip data1.32□□□□□ -2.2not detected
CDC39YCR093W PGS1P25578 521 aa1.32□□□□□ -2.2
CDC39YCR093W HEM12P32347 362 aaPredicted RBP1.32□□□□□ -2.2
CDC39YCR093W SER1P33330 395 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W REG2P38232 338 aa1.32□□□□□ -2.2
CDC39YCR093W YGR054WP53235 642 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W CTL1Q03220 320 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W YDR132CQ03900 495 aa1.32□□□□□ -2.2
CDC39YCR093W SSL1Q04673 461 aaPredicted RBP1.32□□□□□ -2.2
CDC39YCR093W GAL1P04385 528 aa1.32□□□□□ -2.2
CDC39YCR093W GUK1P15454 187 aaKnown RBP1.32□□□□□ -2.2
CDC39YCR093W EXO70P19658 623 aa1.32□□□□□ -2.2
CDC39YCR093W PAH1P32567 862 aa1.32□□□□□ -2.2
CDC39YCR093W PEX5P35056 612 aa1.32□□□□□ -2.2
CDC39YCR093W LHS1P36016 881 aa1.32□□□□□ -2.2
CDC39YCR093W ABZ1P37254 787 aaPredicted RBP1.32□□□□□ -2.2
CDC39YCR093W YJR061WP40355 935 aa1.32□□□□□ -2.2
CDC39YCR093W FKH2P41813 862 aa1.32□□□□□ -2.2
CDC39YCR093W YFL066CP43538 392 aa1.32□□□□□ -2.2
CDC39YCR093W YFL054CP43549 646 aa1.32□□□□□ -2.2
CDC39YCR093W YJL163CP46996 555 aa1.32□□□□□ -2.2
CDC39YCR093W GCV2P49095 1034 aa1.32□□□□□ -2.2
CDC39YCR093W YGR151CP53287 111 aa1.32□□□□□ -2.2
CDC39YCR093W HDA1P53973 706 aa1.32□□□□□ -2.2
CDC39YCR093W SDH5Q08230 162 aa1.32□□□□□ -2.2
CDC39YCR093W ZPS1Q12512 249 aa1.32□□□□□ -2.2
CDC39YCR093W YLR149CQ99296 730 aa1.32□□□□□ -2.2
CDC39YCR093W YBR085C-AO43137 85 aa1.31□□□□□ -2.2
CDC39YCR093W ATP2P00830 511 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W CLB3P24870 427 aa1.31□□□□□ -2.2
CDC39YCR093W FMO1P38866 432 aa1.31□□□□□ -2.2
CDC39YCR093W BSC5P53755 489 aa1.31□□□□□ -2.2
CDC39YCR093W DBP10Q12389 995 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W YKL033W-AQ86ZR7 236 aa1.31□□□□□ -2.2
CDC39YCR093W ECM3Q99252 613 aa1.31□□□□□ -2.2
CDC39YCR093W IML1P47170 1584 aa1.31□□□□□ -2.2
CDC39YCR093W AAC1P04710 309 aa1.31□□□□□ -2.2
CDC39YCR093W ALG7P07286 448 aa1.31□□□□□ -2.2
CDC39YCR093W HMG2P12684 1045 aa1.31□□□□□ -2.2
CDC39YCR093W HSC82P15108 705 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W MCM3P24279 971 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W FEN2P25621 512 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W NTC20P38302 140 aaPredicted RBP1.31□□□□□ -2.2
CDC39YCR093W YHR112CP38716 378 aa1.31□□□□□ -2.2
CDC39YCR093W UBP7P40453 1071 aa1.31□□□□□ -2.2
CDC39YCR093W MUP1P50276 574 aa1.31□□□□□ -2.2
CDC39YCR093W MAL11P53048 616 aa1.31□□□□□ -2.2
CDC39YCR093W IMA1P53051 589 aa1.31□□□□□ -2.2
CDC39YCR093W VTC3Q02725 835 aa1.31□□□□□ -2.2
CDC39YCR093W YDL121CQ07541 149 aa1.31□□□□□ -2.2
CDC39YCR093W SIR1P21691 654 aa1.31□□□□□ -2.2
CDC39YCR093W CLB4P24871 460 aa1.31□□□□□ -2.2
CDC39YCR093W SAT4P25333 603 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W ORC2P32833 620 aa1.31□□□□□ -2.2
CDC39YCR093W DEF1P35732 738 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W SPC97P38863 823 aa1.31□□□□□ -2.2
CDC39YCR093W SCS2P40075 244 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W SNO3P43544 222 aa1.31□□□□□ -2.2
CDC39YCR093W MPS3P47069 682 aa1.31□□□□□ -2.2
CDC39YCR093W VID30P53076 958 aa1.31□□□□□ -2.2
CDC39YCR093W CUL3P53202 744 aa1.31□□□□□ -2.2
CDC39YCR093W CBK1P53894 756 aa1.31□□□□□ -2.2
CDC39YCR093W GTB1Q04924 702 aa1.31□□□□□ -2.2
CDC39YCR093W YFT2Q06676 274 aa1.31□□□□□ -2.2
CDC39YCR093W PUS9Q12069 462 aa1.31□□□□□ -2.2
CDC39YCR093W CHS5Q12114 671 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W PDR12Q02785 1511 aa1.31□□□□□ -2.2
CDC39YCR093W TPK2P06245 380 aa1.31□□□□□ -2.2
CDC39YCR093W TRX2P22803 104 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W YKL151CP36059 337 aa1.31□□□□□ -2.2
CDC39YCR093W RRN3P36070 627 aa1.31□□□□□ -2.2
CDC39YCR093W COS111P38308 924 aa1.31□□□□□ -2.2
CDC39YCR093W BCD1P38772 366 aa1.31□□□□□ -2.2
CDC39YCR093W ZDS2P54786 942 aa1.31□□□□□ -2.2
CDC39YCR093W ERG13P54839 491 aaKnown RBP1.31□□□□□ -2.2
CDC39YCR093W MET14Q02196 202 aa1.31□□□□□ -2.2
CDC39YCR093W YML131WQ03102 365 aa1.31□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 26.9 ms