RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GORABQ5T7V8 394 aa23.97■■□□□ 1.43
CLN3-262ENST00000637699 DOCK3Q8IZD9 2030 aa23.97■■□□□ 1.43
CLN3-262ENST00000637699 NPM3O75607 178 aaKnown RBP23.96■■□□□ 1.43
CLN3-262ENST00000637699 LDHCP07864 332 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 GNAI3P08754 354 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 GSTO1P78417 241 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 FAM110CQ1W6H9 321 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 SPATA5Q8NB90 893 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 NSUN4Q96CB9 384 aaKnown RBP23.96■■□□□ 1.43
CLN3-262ENST00000637699 OSBPL5Q9H0X9 879 aaPredicted RBP23.96■■□□□ 1.43
CLN3-262ENST00000637699 PAK6Q9NQU5 681 aaPredicted RBP23.96■■□□□ 1.43
CLN3-262ENST00000637699 RAI14Q9P0K7 980 aa23.96■■□□□ 1.43
CLN3-262ENST00000637699 PROCA1Q8NCQ7 364 aaPredicted RBP23.95■■□□□ 1.42
CLN3-262ENST00000637699 ZNF280CQ8ND82 737 aa23.95■■□□□ 1.42
CLN3-262ENST00000637699 RARSP54136 660 aaKnown RBP23.94■■□□□ 1.42
CLN3-262ENST00000637699 HMGCS2P54868 508 aa23.94■■□□□ 1.42
CLN3-262ENST00000637699 MTX1Q13505 466 aa23.94■■□□□ 1.42
CLN3-262ENST00000637699 RRP1BQ14684 758 aaKnown RBP23.94■■□□□ 1.42
CLN3-262ENST00000637699 PAWRQ96IZ0 340 aaKnown RBP23.94■■□□□ 1.42
CLN3-262ENST00000637699 CAP2P40123 477 aa23.93■■□□□ 1.42
CLN3-262ENST00000637699 CRISPLD2Q9H0B8 497 aa23.93■■□□□ 1.42
CLN3-262ENST00000637699 MAP4K4O95819 1239 aaPredicted RBP23.92■■□□□ 1.42
CLN3-262ENST00000637699 CAPN2P17655 700 aa23.92■■□□□ 1.42
CLN3-262ENST00000637699 GCLCP48506 637 aaPredicted RBP23.92■■□□□ 1.42
CLN3-262ENST00000637699 PABPC4Q13310 644 aaKnown RBP eCLIP23.92■■□□□ 1.42
CLN3-262ENST00000637699 TEX11Q8IYF3 940 aa23.92■■□□□ 1.42
CLN3-262ENST00000637699 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.92■■□□□ 1.42
CLN3-262ENST00000637699 ASCC2Q9H1I8 757 aaPredicted RBP23.92■■□□□ 1.42
CLN3-262ENST00000637699 USP17L5A8MUK1 530 aa23.91■■□□□ 1.42
CLN3-262ENST00000637699 SH3RF3Q8TEJ3 882 aaPredicted RBP23.91■■□□□ 1.42
CLN3-262ENST00000637699 ARHGAP45Q92619 1136 aa23.91■■□□□ 1.42
CLN3-262ENST00000637699 TBC1D2Q9BYX2 928 aa23.91■■□□□ 1.42
CLN3-262ENST00000637699 LRP2BPQ9P2M1 347 aa23.91■■□□□ 1.42
CLN3-262ENST00000637699 STAP2Q9UGK3 403 aa23.91■■□□□ 1.42
CLN3-262ENST00000637699 ARID4AP29374 1257 aaPredicted RBP23.9■■□□□ 1.42
CLN3-262ENST00000637699 MCAMP43121 646 aa23.9■■□□□ 1.42
CLN3-262ENST00000637699 NECAB2Q7Z6G3 386 aa23.9■■□□□ 1.42
CLN3-262ENST00000637699 DIS3LQ8TF46 1054 aaKnown RBP23.9■■□□□ 1.42
CLN3-262ENST00000637699 COL2A1P02458 1487 aaPredicted RBP23.89■■□□□ 1.42
CLN3-262ENST00000637699 HMGCRP04035 888 aa23.89■■□□□ 1.41
CLN3-262ENST00000637699 G3BP1Q13283 466 aaKnown RBP eCLIP23.89■■□□□ 1.41
CLN3-262ENST00000637699 NOL10Q9BSC4 688 aaKnown RBP23.89■■□□□ 1.41
CLN3-262ENST00000637699 AS3MTQ9HBK9 375 aa23.89■■□□□ 1.41
CLN3-262ENST00000637699 HERC5Q9UII4 1024 aaKnown RBP23.89■■□□□ 1.41
CLN3-262ENST00000637699 GJD2Q9UKL4 321 aa23.89■■□□□ 1.41
CLN3-262ENST00000637699 ATAD5Q96QE3 1844 aa23.89■■□□□ 1.41
CLN3-262ENST00000637699 LOC285556D6RIA3 1793 aa23.88■■□□□ 1.41
CLN3-262ENST00000637699 GNAI2P04899 355 aa23.88■■□□□ 1.41
CLN3-262ENST00000637699 TRIM32Q13049 653 aa23.88■■□□□ 1.41
CLN3-262ENST00000637699 SH3D19Q5HYK7 790 aa23.88■■□□□ 1.41
CLN3-262ENST00000637699 PNMA6EA0A0J9YXQ4 647 aa23.87■■□□□ 1.41
CLN3-262ENST00000637699 UQCRFS1P1P0C7P4 283 aa23.87■■□□□ 1.41
CLN3-262ENST00000637699 HMX1Q9NP08 348 aaPredicted RBP23.87■■□□□ 1.41
CLN3-262ENST00000637699 SNRKQ9NRH2 765 aa23.87■■□□□ 1.41
CLN3-262ENST00000637699 AATFQ9NY61 560 aaKnown RBP eCLIP23.87■■□□□ 1.41
CLN3-262ENST00000637699 PI4KBQ9UBF8 816 aa23.87■■□□□ 1.41
CLN3-262ENST00000637699 TNNQ9UQP3 1299 aa23.87■■□□□ 1.41
CLN3-262ENST00000637699 A0A1W2PPC1 479 aa23.86■■□□□ 1.41
CLN3-262ENST00000637699 SOX1O00570 391 aaPredicted RBP23.86■■□□□ 1.41
CLN3-262ENST00000637699 MTMR2Q13614 643 aa23.86■■□□□ 1.41
CLN3-262ENST00000637699 NAA16Q6N069 864 aaPredicted RBP23.86■■□□□ 1.41
CLN3-262ENST00000637699 RPTORQ8N122 1335 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 LAMA3Q16787 3333 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 PEX10O60683 326 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 IRX3P78415 501 aaPredicted RBP23.85■■□□□ 1.41
CLN3-262ENST00000637699 C7orf61Q8IZ16 206 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 ANKLE1Q8NAG6 615 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 WDR18Q9BV38 432 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 TMOD4Q9NZQ9 345 aa23.85■■□□□ 1.41
CLN3-262ENST00000637699 IPO8O15397 1037 aaKnown RBP23.84■■□□□ 1.41
CLN3-262ENST00000637699 BAG3O95817 575 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 TRIM27P14373 513 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 CYP2B6P20813 491 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 BACE1P56817 501 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 JAG1P78504 1218 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 MAPKAPK5Q8IW41 473 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 TGFBRAP1Q8WUH2 860 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 FRAT1Q92837 279 aaPredicted RBP23.84■■□□□ 1.41
CLN3-262ENST00000637699 LRCH3Q96II8 777 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 P2RX7Q99572 595 aaKnown RBP23.84■■□□□ 1.41
CLN3-262ENST00000637699 DHX36Q9H2U1 1008 aaKnown RBP23.84■■□□□ 1.41
CLN3-262ENST00000637699 MORF4L1Q9UBU8 362 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 ALPK3Q96L96 1907 aa23.84■■□□□ 1.41
CLN3-262ENST00000637699 ASNSP08243 561 aa23.83■■□□□ 1.41
CLN3-262ENST00000637699 TTC39AQ5SRH9 613 aa23.83■■□□□ 1.41
CLN3-262ENST00000637699 TRIB2Q92519 343 aa23.83■■□□□ 1.41
CLN3-262ENST00000637699 CLUAP1Q96AJ1 413 aa23.83■■□□□ 1.41
CLN3-262ENST00000637699 NBPF3Q9H094 633 aa23.83■■□□□ 1.41
CLN3-262ENST00000637699 ZMYND8Q9ULU4 1186 aaPredicted RBP23.83■■□□□ 1.41
CLN3-262ENST00000637699 PLCG2P16885 1265 aa23.82■■□□□ 1.4
CLN3-262ENST00000637699 SHROOM1Q2M3G4 852 aaPredicted RBP23.82■■□□□ 1.4
CLN3-262ENST00000637699 CRACR2BQ8N4Y2 399 aaPredicted RBP23.82■■□□□ 1.4
CLN3-262ENST00000637699 TRIM34Q9BYJ4 488 aa23.82■■□□□ 1.4
CLN3-262ENST00000637699 GDF11O95390 407 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 HOXA7P31268 230 aaPredicted RBP23.81■■□□□ 1.4
CLN3-262ENST00000637699 PPP4CP60510 307 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 ATF7IPQ6VMQ6 1270 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 ADGRA1Q86SQ6 560 aa23.81■■□□□ 1.4
CLN3-262ENST00000637699 FOXP4Q8IVH2 680 aaPredicted RBP23.81■■□□□ 1.4
CLN3-262ENST00000637699 GPRC5AQ8NFJ5 357 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms