RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 FAM196BA6NMK8 535 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 TNNI3KQ59H18 835 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 HABP4Q5JVS0 413 aaKnown RBP23.26■■□□□ 1.31
CDX1-202ENST00000616154 CCDC84Q86UT8 332 aaPredicted RBP23.26■■□□□ 1.31
CDX1-202ENST00000616154 ITPRIPQ8IWB1 547 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 TEX11Q8IYF3 940 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 AGTPBP1Q9UPW5 1226 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 FPGT-TNNI3KV9GXZ4 949 aa23.26■■□□□ 1.31
CDX1-202ENST00000616154 MS4A1P11836 297 aa23.25■■□□□ 1.31
CDX1-202ENST00000616154 ATP8B2P98198 1209 aa23.25■■□□□ 1.31
CDX1-202ENST00000616154 SHISA4Q96DD7 197 aa23.25■■□□□ 1.31
CDX1-202ENST00000616154 DOCK3Q8IZD9 2030 aa23.25■■□□□ 1.31
CDX1-202ENST00000616154 TTC39AQ5SRH9 613 aa23.24■■□□□ 1.31
CDX1-202ENST00000616154 SLAIN1Q8ND83 568 aa23.24■■□□□ 1.31
CDX1-202ENST00000616154 NKX2-3Q8TAU0 364 aa23.24■■□□□ 1.31
CDX1-202ENST00000616154 SMCR8Q8TEV9 937 aaPredicted RBP23.24■■□□□ 1.31
CDX1-202ENST00000616154 DBNDD2Q9BQY9 259 aa23.24■■□□□ 1.31
CDX1-202ENST00000616154 NOL10Q9BSC4 688 aaKnown RBP23.24■■□□□ 1.31
CDX1-202ENST00000616154 TBC1D2Q9BYX2 928 aa23.24■■□□□ 1.31
CDX1-202ENST00000616154 UBXN2AP68543 259 aa23.23■■□□□ 1.31
CDX1-202ENST00000616154 OS9Q13438 667 aaPredicted RBP23.23■■□□□ 1.31
CDX1-202ENST00000616154 CCDC158Q5M9N0 1113 aa23.23■■□□□ 1.31
CDX1-202ENST00000616154 NAA16Q6N069 864 aaPredicted RBP23.23■■□□□ 1.31
CDX1-202ENST00000616154 PROCA1Q8NCQ7 364 aaPredicted RBP23.23■■□□□ 1.31
CDX1-202ENST00000616154 SH3RF3Q8TEJ3 882 aaPredicted RBP23.23■■□□□ 1.31
CDX1-202ENST00000616154 SNRKQ9NRH2 765 aa23.23■■□□□ 1.31
CDX1-202ENST00000616154 HERC5Q9UII4 1024 aaKnown RBP23.23■■□□□ 1.31
CDX1-202ENST00000616154 PNMA3Q9UL41 463 aa23.23■■□□□ 1.31
CDX1-202ENST00000616154 GABRQQ9UN88 632 aa23.23■■□□□ 1.31
CDX1-202ENST00000616154 IGSF3O75054 1194 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 BAG3O95817 575 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 GJB1P08034 283 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 CCL5P13501 91 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 CAP2P40123 477 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 TREML2Q5T2D2 321 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 ZNF280CQ8ND82 737 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 PANK1Q8TE04 598 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 ZNF512BQ96KM6 892 aaPredicted RBP23.22■■□□□ 1.31
CDX1-202ENST00000616154 RCAN3Q9UKA8 241 aa23.22■■□□□ 1.31
CDX1-202ENST00000616154 NOP58Q9Y2X3 529 aaKnown RBP23.22■■□□□ 1.31
CDX1-202ENST00000616154 SURF6O75683 361 aaKnown RBP23.21■■□□□ 1.31
CDX1-202ENST00000616154 PLCG2P16885 1265 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 GJA8P48165 433 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 PPP4CP60510 307 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 SPP2Q13103 211 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 RRP1BQ14684 758 aaKnown RBP23.21■■□□□ 1.31
CDX1-202ENST00000616154 DHX36Q9H2U1 1008 aaKnown RBP23.21■■□□□ 1.31
CDX1-202ENST00000616154 C1orf115Q9H7X2 142 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 AATFQ9NY61 560 aaKnown RBP eCLIP23.21■■□□□ 1.31
CDX1-202ENST00000616154 PI4KBQ9UBF8 816 aa23.21■■□□□ 1.31
CDX1-202ENST00000616154 BIN2Q9UBW5 565 aaPredicted RBP23.21■■□□□ 1.31
CDX1-202ENST00000616154 TNPO2O14787 897 aaKnown RBP23.2■■□□□ 1.3
CDX1-202ENST00000616154 CYP2E1P05181 493 aaPredicted RBP23.2■■□□□ 1.3
CDX1-202ENST00000616154 FLT3LGP49771 235 aa23.2■■□□□ 1.3
CDX1-202ENST00000616154 RNF208Q9H0X6 261 aa23.2■■□□□ 1.3
CDX1-202ENST00000616154 USP17L5A8MUK1 530 aa23.19■■□□□ 1.3
CDX1-202ENST00000616154 ADCY3O60266 1144 aa23.19■■□□□ 1.3
CDX1-202ENST00000616154 IRF5Q13568 498 aa23.19■■□□□ 1.3
CDX1-202ENST00000616154 FAM110CQ1W6H9 321 aa23.19■■□□□ 1.3
CDX1-202ENST00000616154 ANKRD13CQ8N6S4 541 aa23.19■■□□□ 1.3
CDX1-202ENST00000616154 PABPC4Q13310 644 aaKnown RBP eCLIP23.18■■□□□ 1.3
CDX1-202ENST00000616154 CEP85Q6P2H3 762 aa23.18■■□□□ 1.3
CDX1-202ENST00000616154 ADGRA1Q86SQ6 560 aa23.18■■□□□ 1.3
CDX1-202ENST00000616154 PXYLP1Q8TE99 480 aa23.18■■□□□ 1.3
CDX1-202ENST00000616154 AS3MTQ9HBK9 375 aa23.18■■□□□ 1.3
CDX1-202ENST00000616154 FLT1P17948 1338 aa23.18■■□□□ 1.3
CDX1-202ENST00000616154 HMGCS2P54868 508 aa23.17■■□□□ 1.3
CDX1-202ENST00000616154 SH3D19Q5HYK7 790 aa23.17■■□□□ 1.3
CDX1-202ENST00000616154 UBE2Q1Q7Z7E8 422 aa23.17■■□□□ 1.3
CDX1-202ENST00000616154 DBNLQ9UJU6 430 aaKnown RBP23.17■■□□□ 1.3
CDX1-202ENST00000616154 H0YGN5 161 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 ZAP70P43403 619 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 GCLCP48506 637 aaPredicted RBP23.16■■□□□ 1.3
CDX1-202ENST00000616154 METTL16Q86W50 562 aaKnown RBP23.16■■□□□ 1.3
CDX1-202ENST00000616154 MAPKAPK5Q8IW41 473 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 U2AF1L4Q8WU68 220 aaKnown RBP23.16■■□□□ 1.3
CDX1-202ENST00000616154 TGFBRAP1Q8WUH2 860 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 COA7Q96BR5 231 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 WDR18Q9BV38 432 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 UNC93B1Q9H1C4 597 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 MYH1P12882 1939 aa23.16■■□□□ 1.3
CDX1-202ENST00000616154 TRIOBPQ9H2D6 2365 aa23.15■■□□□ 1.3
CDX1-202ENST00000616154 INHAP05111 366 aa23.15■■□□□ 1.3
CDX1-202ENST00000616154 ELNP15502 786 aa23.15■■□□□ 1.3
CDX1-202ENST00000616154 DNAJC18Q9H819 358 aa23.15■■□□□ 1.3
CDX1-202ENST00000616154 PIH1D3Q9NQM4 214 aaKnown RBP23.15■■□□□ 1.3
CDX1-202ENST00000616154 TLR7Q9NYK1 1049 aaKnown RBP23.15■■□□□ 1.3
CDX1-202ENST00000616154 DDX19BQ9UMR2 479 aa23.15■■□□□ 1.3
CDX1-202ENST00000616154 COLQQ9Y215 455 aaPredicted RBP23.15■■□□□ 1.3
CDX1-202ENST00000616154 ASNSP08243 561 aa23.14■■□□□ 1.3
CDX1-202ENST00000616154 FOXP4Q8IVH2 680 aaPredicted RBP23.14■■□□□ 1.3
CDX1-202ENST00000616154 ASCC2Q9H1I8 757 aaPredicted RBP23.14■■□□□ 1.3
CDX1-202ENST00000616154 ZBTB40Q9NUA8 1239 aa23.14■■□□□ 1.3
CDX1-202ENST00000616154 PDE3AQ14432 1141 aa23.13■■□□□ 1.29
CDX1-202ENST00000616154 EAF2Q96CJ1 260 aaPredicted RBP23.13■■□□□ 1.29
CDX1-202ENST00000616154 CCDC8Q9H0W5 538 aaPredicted RBP23.13■■□□□ 1.29
CDX1-202ENST00000616154 GINM1Q9NU53 330 aa23.13■■□□□ 1.29
CDX1-202ENST00000616154 SGPL1O95470 568 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 CAPN2P17655 700 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 BACE1P56817 501 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms