RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 G3BP1Q13283 466 aaKnown RBP eCLIP17.24■□□□□ 0.35
VMP1-209ENST00000588915 ZNF280CQ8ND82 737 aa17.24■□□□□ 0.35
VMP1-209ENST00000588915 PHIPQ8WWQ0 1821 aa17.24■□□□□ 0.35
VMP1-209ENST00000588915 CCER2I3L3R5 266 aa17.23■□□□□ 0.35
VMP1-209ENST00000588915 SLURP2P0DP57 97 aa17.23■□□□□ 0.35
VMP1-209ENST00000588915 SH3D19Q5HYK7 790 aa17.23■□□□□ 0.35
VMP1-209ENST00000588915 UNC93B1Q9H1C4 597 aa17.23■□□□□ 0.35
VMP1-209ENST00000588915 DHX36Q9H2U1 1008 aaKnown RBP17.23■□□□□ 0.35
VMP1-209ENST00000588915 GPR108Q9NPR9 543 aa17.23■□□□□ 0.35
VMP1-209ENST00000588915 USP17L5A8MUK1 530 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 FARP2O94887 1054 aaPredicted RBP17.22■□□□□ 0.35
VMP1-209ENST00000588915 INHAP05111 366 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 TRIM27P14373 513 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 SPP2Q13103 211 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 ATF7IPQ6VMQ6 1270 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 CHRDL2Q6WN34 429 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 AS3MTQ9HBK9 375 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 RAI14Q9P0K7 980 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 LRP2BPQ9P2M1 347 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 PI4KBQ9UBF8 816 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.22■□□□□ 0.35
VMP1-209ENST00000588915 TRIOBPQ9H2D6 2365 aa17.22■□□□□ 0.35
VMP1-209ENST00000588915 BAG3O95817 575 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 PLCG2P16885 1265 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 PPP4CP60510 307 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 TREML2Q5T2D2 321 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 TBC1D9Q6ZT07 1266 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 ANKRD13CQ8N6S4 541 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 NOL10Q9BSC4 688 aaKnown RBP17.21■□□□□ 0.35
VMP1-209ENST00000588915 PAK6Q9NQU5 681 aaPredicted RBP17.21■□□□□ 0.35
VMP1-209ENST00000588915 GINM1Q9NU53 330 aa17.21■□□□□ 0.35
VMP1-209ENST00000588915 ELNP15502 786 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 MCAMP43121 646 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 PI16Q6UXB8 463 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 CCDC84Q86UT8 332 aaPredicted RBP17.2■□□□□ 0.34
VMP1-209ENST00000588915 FOXP4Q8IVH2 680 aaPredicted RBP17.2■□□□□ 0.34
VMP1-209ENST00000588915 TEX11Q8IYF3 940 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 WDR18Q9BV38 432 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 CRISPLD2Q9H0B8 497 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 PRO3102Q9H379 93 aa17.2■□□□□ 0.34
VMP1-209ENST00000588915 PNMA6EA0A0J9YXQ4 647 aa17.19■□□□□ 0.34
VMP1-209ENST00000588915 A0A1W2PPC1 479 aa17.19■□□□□ 0.34
VMP1-209ENST00000588915 ZBTB7BO15156 539 aaPredicted RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 TFRCP02786 760 aaKnown RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 CCDC158Q5M9N0 1113 aa17.19■□□□□ 0.34
VMP1-209ENST00000588915 METTL16Q86W50 562 aaKnown RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 ZNF512BQ96KM6 892 aaPredicted RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 DEFB118Q96PH6 123 aa17.19■□□□□ 0.34
VMP1-209ENST00000588915 RBM27Q9P2N5 1060 aaKnown RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.19■□□□□ 0.34
VMP1-209ENST00000588915 FAM196BA6NMK8 535 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 ASNSP08243 561 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 HOXA7P31268 230 aaPredicted RBP17.18■□□□□ 0.34
VMP1-209ENST00000588915 HMGCS2P54868 508 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 BACE1P56817 501 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 NAA16Q6N069 864 aaPredicted RBP17.18■□□□□ 0.34
VMP1-209ENST00000588915 ANKLE1Q8NAG6 615 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 ASCC2Q9H1I8 757 aaPredicted RBP17.18■□□□□ 0.34
VMP1-209ENST00000588915 MORF4L1Q9UBU8 362 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 GJD2Q9UKL4 321 aa17.18■□□□□ 0.34
VMP1-209ENST00000588915 C19orf81C9J6K1 198 aa17.17■□□□□ 0.34
VMP1-209ENST00000588915 HMGCRP04035 888 aa17.17■□□□□ 0.34
VMP1-209ENST00000588915 POLA2Q14181 598 aa17.17■□□□□ 0.34
VMP1-209ENST00000588915 RRP1BQ14684 758 aaKnown RBP17.17■□□□□ 0.34
VMP1-209ENST00000588915 DOCK3Q8IZD9 2030 aa17.17■□□□□ 0.34
VMP1-209ENST00000588915 SSH3Q8TE77 659 aa17.17■□□□□ 0.34
VMP1-209ENST00000588915 LOC285556D6RIA3 1793 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 EVI5O60447 810 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 TNNI3KQ59H18 835 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 TTC39AQ5SRH9 613 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 NECAB2Q7Z6G3 386 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 SH3RF3Q8TEJ3 882 aaPredicted RBP17.16■□□□□ 0.34
VMP1-209ENST00000588915 FRAT1Q92837 279 aaPredicted RBP17.16■□□□□ 0.34
VMP1-209ENST00000588915 AATFQ9NY61 560 aaKnown RBP eCLIP17.16■□□□□ 0.34
VMP1-209ENST00000588915 FPGT-TNNI3KV9GXZ4 949 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 RPTORQ8N122 1335 aa17.16■□□□□ 0.34
VMP1-209ENST00000588915 BCAR3O75815 825 aa17.15■□□□□ 0.34
VMP1-209ENST00000588915 ATP8B2P98198 1209 aa17.15■□□□□ 0.34
VMP1-209ENST00000588915 CERS3Q8IU89 383 aa17.15■□□□□ 0.34
VMP1-209ENST00000588915 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.15■□□□□ 0.34
VMP1-209ENST00000588915 TMOD4Q9NZQ9 345 aa17.15■□□□□ 0.34
VMP1-209ENST00000588915 TAOK2Q9UL54 1235 aa17.15■□□□□ 0.34
VMP1-209ENST00000588915 USP17L10C9JJH3 530 aa17.14■□□□□ 0.33
VMP1-209ENST00000588915 CYP2E1P05181 493 aaPredicted RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 IRX3P78415 501 aaPredicted RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 ZKSCAN2Q63HK3 967 aa17.14■□□□□ 0.33
VMP1-209ENST00000588915 TMED8Q6PL24 325 aaPredicted RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 GTF3C2Q8WUA4 911 aaPredicted RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 TGFBRAP1Q8WUH2 860 aa17.14■□□□□ 0.33
VMP1-209ENST00000588915 CLUAP1Q96AJ1 413 aa17.14■□□□□ 0.33
VMP1-209ENST00000588915 PAWRQ96IZ0 340 aaKnown RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 HMX1Q9NP08 348 aaPredicted RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 RANBP2P49792 3224 aaKnown RBP17.14■□□□□ 0.33
VMP1-209ENST00000588915 ATAD5Q96QE3 1844 aa17.13■□□□□ 0.33
VMP1-209ENST00000588915 XRCC5P13010 732 aaKnown RBP17.13■□□□□ 0.33
VMP1-209ENST00000588915 TRMT44Q8IYL2 757 aaKnown RBP17.13■□□□□ 0.33
VMP1-209ENST00000588915 CRACR2BQ8N4Y2 399 aaPredicted RBP17.13■□□□□ 0.33
VMP1-209ENST00000588915 TMEM57Q8N5G2 664 aa17.13■□□□□ 0.33
VMP1-209ENST00000588915 DBNDD2Q9BQY9 259 aa17.13■□□□□ 0.33
VMP1-209ENST00000588915 TRIM34Q9BYJ4 488 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms