RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 TSGA10IPQ3SY00 556 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 NBPF12Q5TAG4 269 aaPredicted RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 RNF20Q5VTR2 975 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 MAP1SQ66K74 1059 aaPredicted RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 STOX1Q6ZVD7 989 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 USP48Q86UV5 1035 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 METTL16Q86W50 562 aaKnown RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 LDHDQ86WU2 507 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 SULF1Q8IWU6 871 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 AMOTL1Q8IY63 956 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 STK11IPQ8N1F8 1099 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 SLC44A5Q8NCS7 719 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 NKX2-3Q8TAU0 364 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 CSRNP1Q96S65 589 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 GLIS2Q9BZE0 524 aaPredicted RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 UPF2Q9HAU5 1272 aaKnown RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 GPBP1L1Q9HC44 474 aaPredicted RBP11.33□□□□□ -0.6
RFFL-210ENST00000582308 PI4KBQ9UBF8 816 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 TRPM7Q96QT4 1865 aa11.33□□□□□ -0.6
RFFL-210ENST00000582308 E7EWF7 191 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 HLA-DOAP06340 250 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 FGRP09769 529 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 YY1P25490 414 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 MAP3K10Q02779 954 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 COL9A3Q14050 684 aaPredicted RBP11.32□□□□□ -0.6
RFFL-210ENST00000582308 AKNAD1Q5T1N1 836 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 FOXP4Q8IVH2 680 aaPredicted RBP11.32□□□□□ -0.6
RFFL-210ENST00000582308 STAG1Q8WVM7 1258 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 IL17RAQ96F46 866 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 KIF2CQ99661 725 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 EHD4Q9H223 541 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 DNAJC18Q9H819 358 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 SERPINB13Q9UIV8 391 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.32□□□□□ -0.6
RFFL-210ENST00000582308 PPP2R3BQ9Y5P8 575 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 ATAD5Q96QE3 1844 aa11.32□□□□□ -0.6
RFFL-210ENST00000582308 FAM196BA6NMK8 535 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 KIF3CO14782 793 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 ZKSCAN1P17029 563 aaPredicted RBP11.31□□□□□ -0.6
RFFL-210ENST00000582308 SHMT1P34896 483 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 CDK8P49336 464 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 ANAPC15P60006 121 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 ADCK5Q3MIX3 580 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 C16orf86Q6ZW13 317 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 CDC37L1Q7L3B6 337 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 MIGA2Q7L4E1 593 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 SSC5DA1L4H1 1573 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 NEDD4P46934 1319 aa11.31□□□□□ -0.6
RFFL-210ENST00000582308 TRAF5O00463 557 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 ORC4O43929 436 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 TBC1D12O60347 775 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 PRDM1O75626 825 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 SLC3A2P08195 630 aaKnown RBP11.3□□□□□ -0.6
RFFL-210ENST00000582308 MFSD6Q6ZSS7 791 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 CRACR2BQ8N4Y2 399 aaPredicted RBP11.3□□□□□ -0.6
RFFL-210ENST00000582308 CDCA5Q96FF9 252 aa11.3□□□□□ -0.6
RFFL-210ENST00000582308 HERC5Q9UII4 1024 aaKnown RBP11.3□□□□□ -0.6
RFFL-210ENST00000582308 GREB1LQ9C091 1923 aaPredicted RBP11.3□□□□□ -0.6
RFFL-210ENST00000582308 B4E1Z4 1266 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 PCP11498 1178 aaKnown RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 RASA1P20936 1047 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 FMR1Q06787 632 aaKnown RBP eCLIP11.29□□□□□ -0.6
RFFL-210ENST00000582308 PDE4BQ07343 736 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 KRT32Q14532 448 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 RRP1BQ14684 758 aaKnown RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 SUPT20HL1Q3ZLR7 823 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 RRP12Q5JTH9 1297 aaKnown RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 ZNF784Q8NCA9 323 aaPredicted RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 JAKMIP1Q96N16 626 aaKnown RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 RNF41Q9H4P4 317 aaPredicted RBP11.29□□□□□ -0.6
RFFL-210ENST00000582308 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.29□□□□□ -0.6
RFFL-210ENST00000582308 MKNK2Q9HBH9 465 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 SWAP70Q9UH65 585 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 TAOK2Q9UL54 1235 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 MYH4Q9Y623 1939 aa11.29□□□□□ -0.6
RFFL-210ENST00000582308 PAPPA2Q9BXP8 1791 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 OTOFQ9HC10 1997 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 PHF20L1A8MW92 1017 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 ITGBL1O95965 494 aaPredicted RBP11.28□□□□□ -0.6
RFFL-210ENST00000582308 CPA1P15085 419 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 FAM47AQ5JRC9 791 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 TATDN1Q6P1N9 297 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 CYB5R4Q7L1T6 521 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 MB21D2Q8IYB1 491 aaPredicted RBP11.28□□□□□ -0.6
RFFL-210ENST00000582308 NCOA7Q8NI08 942 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 NEK1Q96PY6 1258 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 TRIM34Q9BYJ4 488 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 TM6SF1Q9BZW5 370 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 KRT23Q9C075 422 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 CNNM2Q9H8M5 875 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 ZSWIM6Q9HCJ5 1215 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 TOMM22Q9NS69 142 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 ZSWIM5Q9P217 1185 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 FZD1Q9UP38 647 aa11.28□□□□□ -0.6
RFFL-210ENST00000582308 DOCK1Q14185 1865 aa11.27□□□□□ -0.6
RFFL-210ENST00000582308 RANBP6O60518 1105 aaKnown RBP11.27□□□□□ -0.61
RFFL-210ENST00000582308 KDM4AO75164 1064 aa11.27□□□□□ -0.61
RFFL-210ENST00000582308 USP2O75604 605 aaPredicted RBP11.27□□□□□ -0.61
RFFL-210ENST00000582308 AKR1B1P15121 316 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms