RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 KIAA1524Q8TCG1 905 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 TIGD1Q96MW7 591 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 FTOQ9C0B1 505 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS13C-206ENST00000558338 LY9Q9HBG7 655 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 SLC12A7Q9Y666 1083 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 BCL9LQ86UU0 1499 aa8.42□□□□□ -1.06
VPS13C-206ENST00000558338 NEDD4P46934 1319 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 A0A0G2JS52 829 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 IFIT3O14879 490 aaKnown RBP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 PCP11498 1178 aaKnown RBP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 CMA1P23946 247 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 SSRP1Q08945 709 aaKnown RBP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 PPP2R5BQ15173 497 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 SAFBQ15424 915 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 ANKRD18AQ8IVF6 992 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 TRIM22Q8IYM9 498 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 HELBQ8NG08 1087 aaPredicted RBP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 IGDCC4Q8TDY8 1250 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 SDF4Q9BRK5 362 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 CLIP2Q9UDT6 1046 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 MAST2Q6P0Q8 1798 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 CASZ1Q86V15 1759 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 MYH14Q7Z406 1995 aaKnown RBP8.41□□□□□ -1.06
VPS13C-206ENST00000558338 ZNF804BA4D1E1 1349 aa8.41□□□□□ -1.06
VPS13C-206ENST00000558338 FMNL1O95466 1100 aaPredicted RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 IFNAR1P17181 557 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 CHRNDQ07001 517 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 ITPK1Q13572 414 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 UBE4AQ14139 1066 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 HSP90AA2PQ14568 343 aaPredicted RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 SLC39A14Q15043 492 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 MICU3Q86XE3 530 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 VPS37DQ86XT2 251 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 MARCH10Q8NA82 808 aaPredicted RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 MYRIPQ8NFW9 859 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 ZNF830Q96NB3 372 aaPredicted RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 NOL10Q9BSC4 688 aaKnown RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 KCNF1Q9H3M0 494 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 ARMT1Q9H993 441 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 EPB41L4AQ9HCS5 686 aaPredicted RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 SEC31BQ9NQW1 1179 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 KIAA1468Q9P260 1216 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 LRP2BPQ9P2M1 347 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 CLIC4Q9Y696 253 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 SLC4A4Q9Y6R1 1079 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 LTBP4Q8N2S1 1624 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 PDS5AQ29RF7 1337 aaKnown RBP8.4□□□□□ -1.06
VPS13C-206ENST00000558338 CNTNAP4Q9C0A0 1308 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 COL24A1Q17RW2 1714 aa8.4□□□□□ -1.06
VPS13C-206ENST00000558338 POTEB3A0JP26 581 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 SMTNL1A8MU46 457 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 GSG1L2A8MUP6 293 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 POLR3DP05423 398 aaPredicted RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 SLC3A2P08195 630 aaKnown RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 U2AF2P26368 475 aaKnown RBP eCLIP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 NDUFA8P51970 172 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 RBM6P78332 1123 aaKnown RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 WTAPQ15007 396 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 SF3B3Q15393 1217 aaKnown RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 KRT40Q6A162 431 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 POTEBQ6S5H4 581 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 C11orf57Q6ZUT1 292 aaPredicted RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 ACSBG1Q96GR2 724 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 HS3ST6Q96QI5 342 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 NYXQ9GZU5 481 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 HOOK1Q9UJC3 728 aaKnown RBP8.4□□□□□ -1.07
VPS13C-206ENST00000558338 DENND2AQ9ULE3 1009 aa8.4□□□□□ -1.07
VPS13C-206ENST00000558338 FAM237AA0A1B0GTK4 181 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 A0A1B0GVL5 298 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 FAM177BA6PVY3 158 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 KIF28PB7ZC32 967 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 CUTAO60888 179 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 DEXIO95424 95 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 ADAMTS2O95450 1211 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 PTGS1P23219 599 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 NT5C2P49902 561 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 GSDMDP57764 484 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 NTRK3Q16288 839 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 RTN1Q16799 776 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 CAVIN4Q5BKX8 364 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 OTUD7BQ6GQQ9 843 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC186Q7Z3E2 898 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 BSDC1Q9NW68 430 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-206ENST00000558338 ZSWIM5Q9P217 1185 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 ANAPC4Q9UJX5 808 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 MYH13Q9UKX3 1938 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 DLEC1Q9Y238 1755 aa8.39□□□□□ -1.07
VPS13C-206ENST00000558338 MAGEB6P1A0A0J9YX57 407 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 TRIM66O15016 1216 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 MYO1BO43795 1136 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 ZNF202O95125 648 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 PFKFB1P16118 471 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 XBP1P17861 261 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 CYP7A1P22680 504 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 CDC27P30260 824 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 GTF2F1P35269 517 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS13C-206ENST00000558338 SYKP43405 635 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 BCAMP50895 628 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 NLRP12P59046 1061 aa8.38□□□□□ -1.07
VPS13C-206ENST00000558338 PPARAQ07869 468 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms