RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 FAM155AB1AL88 458 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-205ENST00000558088 MAPK1P28482 360 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 AFMP43652 599 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 ENOX2Q16206 610 aaKnown RBP5.38□□□□□ -1.55
VPS13C-205ENST00000558088 SPACA3Q8IXA5 215 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 RETREG2Q8NC44 543 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 BHLHE22Q8NFJ8 381 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-205ENST00000558088 FBF1Q8TES7 1133 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 HEXIM2Q96MH2 286 aaKnown RBP5.38□□□□□ -1.55
VPS13C-205ENST00000558088 NECAB3Q96P71 396 aaPredicted RBP5.38□□□□□ -1.55
VPS13C-205ENST00000558088 PCDHA4Q9UN74 947 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 MAPK8IP1Q9UQF2 711 aa5.38□□□□□ -1.55
VPS13C-205ENST00000558088 ZBTB37Q5TC79 503 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 SCARA3Q6AZY7 606 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 ZNF507Q8TCN5 953 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 PPP1R16BQ96T49 567 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 ARID3AQ99856 593 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 PRDM7Q9NQW5 492 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 LMCD1Q9NZU5 365 aa5.37□□□□□ -1.55
VPS13C-205ENST00000558088 GIPC1O14908 333 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 TREHO43280 583 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 ATP2B2Q01814 1243 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 MLANAQ16655 118 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 MPZL3Q6UWV2 235 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 ARMCX6Q7L4S7 300 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 C12orf40Q86WS4 652 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 C3orf58Q8NDZ4 430 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 CCDC120Q96HB5 630 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 CACNA2D2Q9NY47 1150 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 TPX2Q9ULW0 747 aaKnown RBP5.36□□□□□ -1.55
VPS13C-205ENST00000558088 PITPNM2Q9BZ72 1349 aa5.36□□□□□ -1.55
VPS13C-205ENST00000558088 ENC1O14682 589 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 LRIG2O94898 1065 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 MAPK8P45983 427 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 RAP1GAPP47736 663 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 DSC3Q14574 896 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 NKPD1Q17RQ9 610 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 KRTAP19-4Q3LI73 84 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 ALG1LQ6GMV1 187 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 ZNF746Q6NUN9 644 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-205ENST00000558088 CYFIP1Q7L576 1253 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 FAM214BQ7L5A3 538 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 HDXQ7Z353 690 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 ZSCAN29Q8IWY8 852 aaPredicted RBP5.35□□□□□ -1.55
VPS13C-205ENST00000558088 GRIN3AQ8TCU5 1115 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 TOX2Q96NM4 488 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 CYP8B1Q9UNU6 501 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 SPG7Q9UQ90 795 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 CTNND2Q9UQB3 1225 aa5.35□□□□□ -1.55
VPS13C-205ENST00000558088 PRAMEF27A3QJZ7 478 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 FBXO24O75426 580 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 LMNB1P20700 586 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 BMP6P22004 513 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 NTF4P34130 210 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 FBLN7Q53RD9 439 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 MPRIPQ6WCQ1 1025 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 MFSD4AQ8N468 514 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 KIRREL1Q96J84 757 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 KRTAP4-2Q9BYR5 136 aa5.34□□□□□ -1.55
VPS13C-205ENST00000558088 GNEQ9Y223 722 aaKnown RBP5.34□□□□□ -1.55
VPS13C-205ENST00000558088 PAGE1O75459 146 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 EOMESO95936 686 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 GLI1P08151 1106 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 ETF1P62495 437 aaKnown RBP5.33□□□□□ -1.56
VPS13C-205ENST00000558088 RING1Q06587 406 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 MESP2Q0VG99 397 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 TMEM67Q5HYA8 995 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 SFRP5Q5T4F7 317 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 CDKAL1Q5VV42 579 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 PCNX4Q63HM2 1172 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 NPAS4Q8IUM7 802 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 ZSCAN18Q8TBC5 510 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-205ENST00000558088 KRTAP4-9Q9BYQ8 210 aa5.33□□□□□ -1.56
VPS13C-205ENST00000558088 CARS2Q9HA77 564 aaKnown RBP5.33□□□□□ -1.56
VPS13C-205ENST00000558088 ZNF503-AS2A6NEH8 195 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 TSPAN15O95858 294 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 CYP7A1P22680 504 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 SPOCD1Q6ZMY3 1216 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 UBE3DQ7Z6J8 389 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 MFSD2AQ8NA29 543 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 LIN37Q96GY3 246 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-205ENST00000558088 HSPA12BQ96MM6 686 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 MIPEPQ99797 713 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 ATP13A1Q9HD20 1204 aa5.32□□□□□ -1.56
VPS13C-205ENST00000558088 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS13C-205ENST00000558088 BRD1O95696 1058 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 RAC2P15153 192 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 C22orf34Q6ZV56 151 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 ANKLE2Q86XL3 938 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 ANKRD24Q8TF21 1146 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 COX4I2Q96KJ9 171 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 FAM8A1Q9UBU6 413 aa5.31□□□□□ -1.56
VPS13C-205ENST00000558088 H3BS24 57 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 NFIBO00712 420 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 SLITRK5O94991 958 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 CELA3AP09093 270 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 ZNF865P0CJ78 1059 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-205ENST00000558088 GDNFP39905 211 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 FGD1P98174 961 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 FYB2Q5VWT5 728 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms