RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 AEBP2Q6ZN18 517 aaPredicted RBP20.08■□□□□ 0.81
VPS13C-205ENST00000558088 CHIC1Q5VXU3 224 aa19.21■□□□□ 0.67
VPS13C-205ENST00000558088 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
VPS13C-205ENST00000558088 PHF23Q9BUL5 403 aaPredicted RBP16.99■□□□□ 0.31
VPS13C-205ENST00000558088 FOXD1Q16676 465 aa15.99■□□□□ 0.15
VPS13C-205ENST00000558088 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
VPS13C-205ENST00000558088 MSH5O43196 834 aa15.05■□□□□ -0
VPS13C-205ENST00000558088 PIAS4Q8N2W9 510 aaPredicted RBP15.03■□□□□ -0
VPS13C-205ENST00000558088 ADRA2BP18089 450 aa14.95□□□□□ -0.02
VPS13C-205ENST00000558088 PPP6R1Q9UPN7 881 aa14.95□□□□□ -0.02
VPS13C-205ENST00000558088 POTEDQ86YR6 584 aa14.91□□□□□ -0.02
VPS13C-205ENST00000558088 SCAF1Q9H7N4 1312 aaKnown RBP13.83□□□□□ -0.2
VPS13C-205ENST00000558088 MAPK8IP2Q13387 824 aaPredicted RBP13.69□□□□□ -0.22
VPS13C-205ENST00000558088 DMRT2Q9Y5R5 561 aa13.66□□□□□ -0.22
VPS13C-205ENST00000558088 PPP4R3CPQ6ZMV5 832 aa13.5□□□□□ -0.25
VPS13C-205ENST00000558088 CNKSR2Q8WXI2 1034 aa13.26□□□□□ -0.29
VPS13C-205ENST00000558088 DCAF8L1A6NGE4 600 aa13.18□□□□□ -0.3
VPS13C-205ENST00000558088 HOXD11P31277 338 aaPredicted RBP13.16□□□□□ -0.3
VPS13C-205ENST00000558088 RNF216Q9NWF9 866 aaPredicted RBP13.12□□□□□ -0.31
VPS13C-205ENST00000558088 NCBP3Q53F19 620 aaKnown RBP13.1□□□□□ -0.31
VPS13C-205ENST00000558088 CACNB1Q02641 598 aaPredicted RBP12.88□□□□□ -0.35
VPS13C-205ENST00000558088 NPM3O75607 178 aaKnown RBP12.79□□□□□ -0.36
VPS13C-205ENST00000558088 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
VPS13C-205ENST00000558088 DNAJC5BQ9UF47 199 aa12.73□□□□□ -0.37
VPS13C-205ENST00000558088 C1QBPQ07021 282 aaKnown RBP12.65□□□□□ -0.38
VPS13C-205ENST00000558088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS13C-205ENST00000558088 KCNA4P22459 653 aa12.59□□□□□ -0.39
VPS13C-205ENST00000558088 U3KPZ7 1027 aaPredicted RBP12.28□□□□□ -0.44
VPS13C-205ENST00000558088 SLC4A2P04920 1241 aa12.16□□□□□ -0.46
VPS13C-205ENST00000558088 CAPN15O75808 1086 aa12.14□□□□□ -0.47
VPS13C-205ENST00000558088 APLP2Q06481 763 aa12.12□□□□□ -0.47
VPS13C-205ENST00000558088 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.09□□□□□ -0.47
VPS13C-205ENST00000558088 HNRNPUL2Q1KMD3 747 aaKnown RBP12.09□□□□□ -0.47
VPS13C-205ENST00000558088 SPINK5Q9NQ38 1064 aaPredicted RBP12.07□□□□□ -0.48
VPS13C-205ENST00000558088 SAMD1Q6SPF0 538 aaPredicted RBP11.99□□□□□ -0.49
VPS13C-205ENST00000558088 DSG3P32926 999 aa11.98□□□□□ -0.49
VPS13C-205ENST00000558088 SLC4A1APQ9BWU0 796 aaKnown RBP11.97□□□□□ -0.49
VPS13C-205ENST00000558088 ZNF219Q9P2Y4 722 aaPredicted RBP11.96□□□□□ -0.49
VPS13C-205ENST00000558088 TRHP20396 242 aaPredicted RBP11.95□□□□□ -0.5
VPS13C-205ENST00000558088 MYCNP04198 464 aaPredicted RBP11.9□□□□□ -0.5
VPS13C-205ENST00000558088 ABCB7O75027 752 aa11.82□□□□□ -0.52
VPS13C-205ENST00000558088 FOXD4L1Q9NU39 408 aa11.79□□□□□ -0.52
VPS13C-205ENST00000558088 POLA2Q14181 598 aa11.62□□□□□ -0.55
VPS13C-205ENST00000558088 RBM42Q9BTD8 480 aaKnown RBP11.55□□□□□ -0.56
VPS13C-205ENST00000558088 ZBTB22O15209 634 aa11.52□□□□□ -0.57
VPS13C-205ENST00000558088 POTEHQ6S545 545 aa11.49□□□□□ -0.57
VPS13C-205ENST00000558088 ATF5Q9Y2D1 282 aaPredicted RBP11.49□□□□□ -0.57
VPS13C-205ENST00000558088 ZBTB12Q9Y330 459 aaPredicted RBP11.48□□□□□ -0.57
VPS13C-205ENST00000558088 ATXN8OSP0DMR3 200 aa11.44□□□□□ -0.58
VPS13C-205ENST00000558088 OSCARQ8IYS5 282 aa11.24□□□□□ -0.61
VPS13C-205ENST00000558088 AKT1S1Q96B36 256 aa11.24□□□□□ -0.61
VPS13C-205ENST00000558088 FBLN2P98095 1184 aa11.22□□□□□ -0.61
VPS13C-205ENST00000558088 CHRDL2Q6WN34 429 aa11.2□□□□□ -0.62
VPS13C-205ENST00000558088 REM2Q8IYK8 340 aaPredicted RBP11.1□□□□□ -0.63
VPS13C-205ENST00000558088 SPDYE2BA6NHP3 402 aa11.08□□□□□ -0.64
VPS13C-205ENST00000558088 SPDYE6P0CI01 402 aa11.08□□□□□ -0.64
VPS13C-205ENST00000558088 SPDYE2Q495Y8 402 aa11.08□□□□□ -0.64
VPS13C-205ENST00000558088 CSRNP3Q8WYN3 585 aa11.08□□□□□ -0.64
VPS13C-205ENST00000558088 EHMT2Q96KQ7 1210 aa11.05□□□□□ -0.64
VPS13C-205ENST00000558088 PITPNM1O00562 1244 aa10.98□□□□□ -0.65
VPS13C-205ENST00000558088 MKRN4PQ13434 485 aaPredicted RBP10.98□□□□□ -0.65
VPS13C-205ENST00000558088 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
VPS13C-205ENST00000558088 PIP4P2Q8N4L2 257 aa10.92□□□□□ -0.66
VPS13C-205ENST00000558088 SPDYE1Q8NFV5 336 aaPredicted RBP10.89□□□□□ -0.67
VPS13C-205ENST00000558088 SSUH2Q9Y2M2 353 aa10.88□□□□□ -0.67
VPS13C-205ENST00000558088 CLEC11AQ9Y240 323 aa10.86□□□□□ -0.67
VPS13C-205ENST00000558088 FXR2P51116 673 aaKnown RBP eCLIP10.85□□□□□ -0.672e-6■■■■□ 24.5
VPS13C-205ENST00000558088 PABPN1Q86U42 306 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS13C-205ENST00000558088 HAX1O00165 279 aa10.77□□□□□ -0.69
VPS13C-205ENST00000558088 SP7Q8TDD2 431 aaPredicted RBP10.73□□□□□ -0.69
VPS13C-205ENST00000558088 PRKAR2AP13861 404 aaKnown RBP10.72□□□□□ -0.69
VPS13C-205ENST00000558088 PRR29P0C7W0 189 aa10.69□□□□□ -0.7
VPS13C-205ENST00000558088 SPDYE4A6NLX3 237 aa10.59□□□□□ -0.71
VPS13C-205ENST00000558088 CHADLQ6NUI6 762 aa10.57□□□□□ -0.72
VPS13C-205ENST00000558088 STAG3Q9UJ98 1225 aa10.56□□□□□ -0.72
VPS13C-205ENST00000558088 C19orf67A6NJJ6 358 aa10.5□□□□□ -0.73
VPS13C-205ENST00000558088 EVX2Q03828 476 aa10.49□□□□□ -0.73
VPS13C-205ENST00000558088 FARP1Q9Y4F1 1045 aaPredicted RBP10.46□□□□□ -0.73
VPS13C-205ENST00000558088 CD44P16070 742 aaKnown RBP10.4□□□□□ -0.74
VPS13C-205ENST00000558088 CREBZFQ9NS37 354 aa10.36□□□□□ -0.75
VPS13C-205ENST00000558088 GABBR2O75899 941 aa10.34□□□□□ -0.75
VPS13C-205ENST00000558088 CLCN6P51797 869 aa10.3□□□□□ -0.76
VPS13C-205ENST00000558088 PAK3O75914 559 aaPredicted RBP10.29□□□□□ -0.76
VPS13C-205ENST00000558088 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS13C-205ENST00000558088 PROM2Q8N271 834 aa10.27□□□□□ -0.77
VPS13C-205ENST00000558088 ZRANB1Q9UGI0 708 aa10.27□□□□□ -0.77
VPS13C-205ENST00000558088 PLEKHG5O94827 1062 aa10.22□□□□□ -0.77
VPS13C-205ENST00000558088 ZNF579Q8NAF0 562 aaKnown RBP10.22□□□□□ -0.77
VPS13C-205ENST00000558088 DCBLD2Q96PD2 775 aa10.17□□□□□ -0.78
VPS13C-205ENST00000558088 MNX1P50219 401 aaPredicted RBP10.15□□□□□ -0.78
VPS13C-205ENST00000558088 MIER1Q8N108 512 aa10.13□□□□□ -0.79
VPS13C-205ENST00000558088 FKBP8Q14318 412 aa10.12□□□□□ -0.79
VPS13C-205ENST00000558088 PHF12Q96QT6 1004 aa10.09□□□□□ -0.79
VPS13C-205ENST00000558088 PLCD3Q8N3E9 789 aa10.08□□□□□ -0.8
VPS13C-205ENST00000558088 LHX8Q68G74 356 aa10.07□□□□□ -0.8
VPS13C-205ENST00000558088 GALR2O43603 387 aaPredicted RBP10.06□□□□□ -0.8
VPS13C-205ENST00000558088 POTEIP0CG38 1075 aa10.05□□□□□ -0.8
VPS13C-205ENST00000558088 TSPYL2Q9H2G4 693 aaPredicted RBP10.05□□□□□ -0.8
VPS13C-205ENST00000558088 ZBTB47Q9UFB7 747 aaPredicted RBP10.04□□□□□ -0.8
VPS13C-205ENST00000558088 FBXO3Q9UK99 471 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms