RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	IGSF3	O75054	1194 aa		28.33	■■■□□ 2.13
SMARCD1-204	ENST00000547637	PI16	Q6UXB8	463 aa		28.33	■■■□□ 2.13
SMARCD1-204	ENST00000547637	ZNF280C	Q8ND82	737 aa		28.33	■■■□□ 2.13
SMARCD1-204	ENST00000547637	PXYLP1	Q8TE99	480 aa		28.33	■■■□□ 2.13
SMARCD1-204	ENST00000547637	DHX36	Q9H2U1	1008 aa	Known RBP	28.33	■■■□□ 2.13
SMARCD1-204	ENST00000547637	MCAM	P43121	646 aa		28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FLT3LG	P49771	235 aa		28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SPP2	Q13103	211 aa		28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	NAA16	Q6N069	864 aa	Predicted RBP	28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	PI4KB	Q9UBF8	816 aa		28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	GABRQ	Q9UN88	632 aa		28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	COL2A1	P02458	1487 aa	Predicted RBP	28.32	■■■□□ 2.12
SMARCD1-204	ENST00000547637	USP17L5	A8MUK1	530 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	CAP2	P40123	477 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	IRF5	Q13568	498 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	ANKRD13C	Q8N6S4	541 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	ZNF384	Q8TF68	577 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TRIM34	Q9BYJ4	488 aa		28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	28.31	■■■□□ 2.12
SMARCD1-204	ENST00000547637	GCLC	P48506	637 aa	Predicted RBP	28.3	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FAM110C	Q1W6H9	321 aa		28.3	■■■□□ 2.12
SMARCD1-204	ENST00000547637	COLQ	Q9Y215	455 aa	Predicted RBP	28.3	■■■□□ 2.12
SMARCD1-204	ENST00000547637	PTPRF	P10586	1907 aa		28.3	■■■□□ 2.12
SMARCD1-204	ENST00000547637		H0YGN5	161 aa		28.29	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SLURP2	P0DP57	97 aa		28.29	■■■□□ 2.12
SMARCD1-204	ENST00000547637	ATP8B2	P98198	1209 aa		28.29	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FTSJ3	Q8IY81	847 aa	Known RBP	28.29	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SHISA4	Q96DD7	197 aa		28.29	■■■□□ 2.12
SMARCD1-204	ENST00000547637	BRCA2	P51587	3418 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FAM196B	A6NMK8	535 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SURF6	O75683	361 aa	Known RBP	28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TNNI3K	Q59H18	835 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TMEM57	Q8N5G2	664 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	U2AF1L4	Q8WU68	220 aa	Known RBP	28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TAOK2	Q9UL54	1235 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	NR2E3	Q9Y5X4	410 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FPGT-TNNI3K	V9GXZ4	949 aa		28.28	■■■□□ 2.12
SMARCD1-204	ENST00000547637	PHIP	Q8WWQ0	1821 aa		28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SGPL1	O95470	568 aa		28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TREML2	Q5T2D2	321 aa		28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	CCDC84	Q86UT8	332 aa	Predicted RBP	28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FOXP4	Q8IVH2	680 aa	Predicted RBP	28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	AATF	Q9NY61	560 aa	Known RBP eCLIP	28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	28.27	■■■□□ 2.12
SMARCD1-204	ENST00000547637	TFRC	P02786	760 aa	Known RBP	28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	ASNS	P08243	561 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	HMGCS2	P54868	508 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	POLA2	Q14181	598 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	UNC93B1	Q9H1C4	597 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	SNRK	Q9NRH2	765 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	TMOD4	Q9NZQ9	345 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	TNN	Q9UQP3	1299 aa		28.26	■■■□□ 2.11
SMARCD1-204	ENST00000547637	INHA	P05111	366 aa		28.25	■■■□□ 2.11
SMARCD1-204	ENST00000547637	PPP4C	P60510	307 aa		28.25	■■■□□ 2.11
SMARCD1-204	ENST00000547637	SSH3	Q8TE77	659 aa		28.25	■■■□□ 2.11
SMARCD1-204	ENST00000547637	GINM1	Q9NU53	330 aa		28.25	■■■□□ 2.11
SMARCD1-204	ENST00000547637	FARP2	O94887	1054 aa	Predicted RBP	28.24	■■■□□ 2.11
SMARCD1-204	ENST00000547637	ELN	P15502	786 aa		28.24	■■■□□ 2.11
SMARCD1-204	ENST00000547637	FXR1	P51114	621 aa	Known RBP eCLIP	28.24	■■■□□ 2.11
SMARCD1-204	ENST00000547637	ZNF512B	Q96KM6	892 aa	Predicted RBP	28.24	■■■□□ 2.11
SMARCD1-204	ENST00000547637	DBNDD2	Q9BQY9	259 aa		28.24	■■■□□ 2.11
SMARCD1-204	ENST00000547637	SH3D19	Q5HYK7	790 aa		28.23	■■■□□ 2.11
SMARCD1-204	ENST00000547637	TGFBRAP1	Q8WUH2	860 aa		28.23	■■■□□ 2.11
SMARCD1-204	ENST00000547637	C19orf81	C9J6K1	198 aa		28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	CEP290	O15078	2479 aa		28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	HLA-DOA	P06340	250 aa		28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	IRX3	P78415	501 aa	Predicted RBP	28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	CERS3	Q8IU89	383 aa		28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	WDR18	Q9BV38	432 aa		28.22	■■■□□ 2.11
SMARCD1-204	ENST00000547637	MAPKAPK5	Q8IW41	473 aa		28.21	■■■□□ 2.11
SMARCD1-204	ENST00000547637	ITPRIP	Q8IWB1	547 aa		28.21	■■■□□ 2.11
SMARCD1-204	ENST00000547637	DEFB118	Q96PH6	123 aa		28.21	■■■□□ 2.11
SMARCD1-204	ENST00000547637	ASCC2	Q9H1I8	757 aa	Predicted RBP	28.21	■■■□□ 2.11
SMARCD1-204	ENST00000547637	CYP2E1	P05181	493 aa	Predicted RBP	28.2	■■■□□ 2.1
SMARCD1-204	ENST00000547637	BACE1	P56817	501 aa		28.2	■■■□□ 2.1
SMARCD1-204	ENST00000547637	CHRDL2	Q6WN34	429 aa		28.2	■■■□□ 2.1
SMARCD1-204	ENST00000547637	UBE2Q1	Q7Z7E8	422 aa		28.2	■■■□□ 2.1
SMARCD1-204	ENST00000547637	ATAD5	Q96QE3	1844 aa		28.2	■■■□□ 2.1
SMARCD1-204	ENST00000547637	DOCK3	Q8IZD9	2030 aa		28.19	■■■□□ 2.1
SMARCD1-204	ENST00000547637	NOP58	Q9Y2X3	529 aa	Known RBP	28.19	■■■□□ 2.1
SMARCD1-204	ENST00000547637	FLT1	P17948	1338 aa		28.18	■■■□□ 2.1
SMARCD1-204	ENST00000547637	USP17L10	C9JJH3	530 aa		28.18	■■■□□ 2.1
SMARCD1-204	ENST00000547637	MTMR2	Q13614	643 aa		28.18	■■■□□ 2.1
SMARCD1-204	ENST00000547637	EVI5	O60447	810 aa		28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	HMGCR	P04035	888 aa		28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	ZAP70	P43403	619 aa		28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	TMED8	Q6PL24	325 aa	Predicted RBP	28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	CCAR1	Q8IX12	1150 aa	Known RBP	28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	PAK6	Q9NQU5	681 aa	Predicted RBP	28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	PALD1	Q9ULE6	856 aa		28.17	■■■□□ 2.1
SMARCD1-204	ENST00000547637	CYP7A1	P22680	504 aa		28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	HOXA7	P31268	230 aa	Predicted RBP	28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	HNRNPU	Q00839	825 aa	Known RBP eCLIP	28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	RRP1B	Q14684	758 aa	Known RBP	28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	METTL16	Q86W50	562 aa	Known RBP	28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	GTF3C2	Q8WUA4	911 aa	Predicted RBP	28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	C1orf115	Q9H7X2	142 aa		28.16	■■■□□ 2.1
SMARCD1-204	ENST00000547637	LOC285556	D6RIA3	1793 aa		28.16	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms