RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 CCDC116Q8IYX3 515 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 DZIP1LQ8IYY4 767 aaKnown RBP6.35□□□□□ -1.39
CLIP1-217ENST00000543205 DEPDC4Q8N2C3 294 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 RPGRQ92834 1020 aaKnown RBP6.35□□□□□ -1.39
CLIP1-217ENST00000543205 MASTLQ96GX5 879 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 RBM17Q96I25 401 aaKnown RBP6.35□□□□□ -1.39
CLIP1-217ENST00000543205 SPACA7Q96KW9 195 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 PIF1Q9H611 641 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 PIM2Q9P1W9 311 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 ABCC12Q96J65 1359 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 PXDNLA1KZ92 1463 aa6.35□□□□□ -1.39
CLIP1-217ENST00000543205 ABCC4O15439 1325 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 CDHR2Q9BYE9 1310 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 NRXN2Q9P2S2 1712 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 AFDNP55196 1824 aaKnown RBP6.34□□□□□ -1.39
CLIP1-217ENST00000543205 ANKRD36CQ5JPF3 1778 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 KLRG2A4D1S0 409 aaPredicted RBP6.34□□□□□ -1.39
CLIP1-217ENST00000543205 J3QL48 77 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 ERVH48-1M5A8F1 160 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 PLIN1O60240 522 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 PDE8AO60658 829 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 SRGNP10124 158 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 NPR1P16066 1061 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 DHX9Q08211 1270 aaKnown RBP6.34□□□□□ -1.39
CLIP1-217ENST00000543205 NNTQ13423 1086 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 NCOA4Q13772 614 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 GPR162Q16538 588 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 EML3Q32P44 896 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 TSGA10IPQ3SY00 556 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 INTS3Q68E01 1043 aaKnown RBP6.34□□□□□ -1.39
CLIP1-217ENST00000543205 STYK1Q6J9G0 422 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 TEX2Q8IWB9 1127 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 CNKSR1Q969H4 720 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 CCDC136Q96JN2 1154 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 WWC3Q9ULE0 1092 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 TNNQ9UQP3 1299 aa6.34□□□□□ -1.39
CLIP1-217ENST00000543205 KCNA3P22001 575 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 ALDH1B1P30837 517 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 DALRD3Q5D0E6 543 aaKnown RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 LDLRAD1Q5T700 205 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 DDX46Q7L014 1031 aaKnown RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 ITPRIPQ8IWB1 547 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 TMEM57Q8N5G2 664 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 TTLL6Q8N841 843 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 TOR4AQ9NXH8 423 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 NOVA2Q9UNW9 492 aaKnown RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 HDAC5Q9UQL6 1122 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 RIC1Q4ADV7 1423 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 NR3C2P08235 984 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 NBPF7P0C2Y1 421 aaPredicted RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 UBTFL1P0CB47 393 aaPredicted RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 CASP7P55210 303 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 CTSWP56202 376 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 ELOAQ14241 798 aaKnown RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 SF3B3Q15393 1217 aaKnown RBP6.33□□□□□ -1.4
CLIP1-217ENST00000543205 CRY2Q49AN0 593 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 CCDC152Q4G0S7 254 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 SDE2Q6IQ49 451 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 PLEKHM2Q8IWE5 1019 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 PANK1Q8TE04 598 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 PLA2G12BQ9BX93 195 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 USP44Q9H0E7 712 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 TMPRSS4Q9NRS4 437 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 BCS1LQ9Y276 419 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 UTYO14607 1347 aa6.33□□□□□ -1.4
CLIP1-217ENST00000543205 GNAI3P08754 354 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 RLBP1P12271 317 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 HOXA10P31260 410 aaPredicted RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 PPP1R26Q5T8A7 1209 aaPredicted RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 TTLL11Q8NHH1 800 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 CRAMP1Q96RY5 1269 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 IQSEC3Q9UPP2 1182 aaPredicted RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 CHMP3Q9Y3E7 222 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 KIF13BQ9NQT8 1826 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 LZTS3O60299 673 aaPredicted RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 RRP1P56182 461 aaKnown RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 PDE3AQ14432 1141 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 PRPF40BQ6NWY9 871 aaKnown RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 SUCLG2Q96I99 432 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 TINF2Q9BSI4 451 aa6.32□□□□□ -1.4
CLIP1-217ENST00000543205 TMX4Q9H1E5 349 aaPredicted RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 CHMP4BQ9H444 224 aaKnown RBP6.32□□□□□ -1.4
CLIP1-217ENST00000543205 CHD4Q14839 1912 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 BBOX1O75936 387 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 MYCP01106 439 aaPredicted RBP6.31□□□□□ -1.4
CLIP1-217ENST00000543205 SMPD1P17405 629 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 FOXO4P98177 505 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 GRAPQ13588 217 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 MVPQ14764 893 aaKnown RBP6.31□□□□□ -1.4
CLIP1-217ENST00000543205 TCEAL1Q15170 157 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 PTPROQ16827 1216 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 LMBR1LQ6UX01 489 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 GRAPLQ8TC17 118 aaPredicted RBP6.31□□□□□ -1.4
CLIP1-217ENST00000543205 CDC5LQ99459 802 aaKnown RBP6.31□□□□□ -1.4
CLIP1-217ENST00000543205 MEIS3Q99687 375 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 BICC1Q9H694 974 aaKnown RBP6.31□□□□□ -1.4
CLIP1-217ENST00000543205 CYLDQ9NQC7 956 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 PGPEP1Q9NXJ5 209 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 PRKAG2Q9UGJ0 569 aa6.31□□□□□ -1.4
CLIP1-217ENST00000543205 MKRN1Q9UHC7 482 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms