RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 CNGA1P29973 690 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 FPGSQ05932 587 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 CCDC85BQ15834 202 aaPredicted RBP11.98□□□□□ -0.49
YBX3-211ENST00000541351 C1orf53Q5VUE5 145 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 ZSCAN29Q8IWY8 852 aaPredicted RBP11.98□□□□□ -0.49
YBX3-211ENST00000541351 ASCC2Q9H1I8 757 aaPredicted RBP11.98□□□□□ -0.49
YBX3-211ENST00000541351 EPHX3Q9H6B9 360 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 PDLIM7Q9NR12 457 aa11.98□□□□□ -0.49
YBX3-211ENST00000541351 PHF20L1A8MW92 1017 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 SMIM22K7EJ46 135 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 SNX17Q15036 470 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 RAB30Q15771 203 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 TREML2Q5T2D2 321 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 ZNF280CQ8ND82 737 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 WDR66Q8TBY9 1149 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 HERVK_113Q902F9 699 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 PRDM12Q9H4Q4 367 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.97□□□□□ -0.494e-26■■■□□ 16.2
YBX3-211ENST00000541351 AS3MTQ9HBK9 375 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 MBIPQ9NS73 344 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 MSRAQ9UJ68 235 aa11.97□□□□□ -0.49
YBX3-211ENST00000541351 MROH5Q6ZUA9 1318 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 PRR33A8MZF0 331 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 ENTPD3O75355 529 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 GNAI1P63096 354 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 CCNA1P78396 465 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 SKIV2LQ15477 1246 aaKnown RBP11.96□□□□□ -0.49
YBX3-211ENST00000541351 FBXO33Q7Z6M2 555 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 PLEKHH3Q7Z736 793 aa11.96□□□□□ -0.49
YBX3-211ENST00000541351 ELL2O00472 640 aaPredicted RBP11.95□□□□□ -0.5
YBX3-211ENST00000541351 CLTBP09497 229 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 ATP2B2Q01814 1243 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 TRIM60Q495X7 471 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 CDC42EP5Q6NZY7 148 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 EDC3Q96F86 508 aaKnown RBP11.95□□□□□ -0.5
YBX3-211ENST00000541351 NECAB3Q96P71 396 aaPredicted RBP11.95□□□□□ -0.5
YBX3-211ENST00000541351 OSBPL5Q9H0X9 879 aaPredicted RBP11.95□□□□□ -0.5
YBX3-211ENST00000541351 MTIF3Q9H2K0 278 aaKnown RBP11.95□□□□□ -0.5
YBX3-211ENST00000541351 TMOD4Q9NZQ9 345 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 COG5Q9UP83 839 aa11.95□□□□□ -0.5
YBX3-211ENST00000541351 ERC2O15083 957 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 HMGCS2P54868 508 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 CASP7P55210 303 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 MAP3K10Q02779 954 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 SPP2Q13103 211 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 MAP2K5Q13163 448 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 GRIK5Q16478 980 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 CSPP1Q1MSJ5 1256 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 MORN1Q5T089 497 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 GPR142Q7Z601 462 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 LINS1Q8NG48 757 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 USP6NLQ92738 828 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 SLC28A3Q9HAS3 691 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 USP40Q9NVE5 1235 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 IFT57Q9NWB7 429 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 IQSEC3Q9UPP2 1182 aaPredicted RBP11.94□□□□□ -0.5
YBX3-211ENST00000541351 IVNS1ABPQ9Y6Y0 642 aa11.94□□□□□ -0.5
YBX3-211ENST00000541351 TRIM43BA6NCK2 446 aa11.93□□□□□ -0.5
YBX3-211ENST00000541351 NFIAQ12857 509 aa11.93□□□□□ -0.5
YBX3-211ENST00000541351 GJC2Q5T442 439 aaPredicted RBP11.93□□□□□ -0.5
YBX3-211ENST00000541351 TRIM43Q96BQ3 446 aaPredicted RBP11.93□□□□□ -0.5
YBX3-211ENST00000541351 FAM198AQ9UFP1 575 aa11.93□□□□□ -0.5
YBX3-211ENST00000541351 DAGLAQ9Y4D2 1042 aa11.93□□□□□ -0.5
YBX3-211ENST00000541351 PTPRFP10586 1907 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 USP17L5A8MUK1 530 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 KIAA0355O15063 1070 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 GTPBP6O43824 516 aaPredicted RBP11.92□□□□□ -0.5
YBX3-211ENST00000541351 HOXA7P31268 230 aaPredicted RBP11.92□□□□□ -0.5
YBX3-211ENST00000541351 HERVK_113P62684 666 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 ERVK-9P63128 1117 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 ERVK-24P63145 666 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 TLE2Q04725 743 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 PPIGQ13427 754 aaKnown RBP eCLIP11.92□□□□□ -0.55e-7■■■□□ 14.7
YBX3-211ENST00000541351 CCL14Q16627 93 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 SH3D19Q5HYK7 790 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 LMBR1LQ6UX01 489 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 SLF2Q8IX21 1173 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 RUNDC1Q96C34 613 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 IDI2Q9BXS1 227 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 PBX4Q9BYU1 374 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 TMEM39AQ9NV64 488 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 ATRNL1Q5VV63 1379 aa11.92□□□□□ -0.5
YBX3-211ENST00000541351 KIF16BQ96L93 1317 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 MYO9BQ13459 2157 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 SLC15A5A6NIM6 579 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 PI4K2BG5E9Z4 385 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 TBC1D12O60347 775 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 MYCNP04198 464 aaPredicted RBP11.91□□□□□ -0.5
YBX3-211ENST00000541351 RGS3P49796 1198 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 NHLH1Q02575 133 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 PSRC1Q6PGN9 363 aaPredicted RBP11.91□□□□□ -0.5
YBX3-211ENST00000541351 A0A1B0GUL6 1792 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 DOCK1Q14185 1865 aa11.91□□□□□ -0.5
YBX3-211ENST00000541351 DNAH12Q6ZR08 3092 aa11.9□□□□□ -0.5
YBX3-211ENST00000541351 DCDC2CA8MYV0 355 aa11.9□□□□□ -0.5
YBX3-211ENST00000541351 ST18O60284 1047 aa11.9□□□□□ -0.5
YBX3-211ENST00000541351 LDHBP07195 334 aaKnown RBP11.9□□□□□ -0.5
YBX3-211ENST00000541351 IFIT1P09914 478 aaKnown RBP11.9□□□□□ -0.5
YBX3-211ENST00000541351 ALADP13716 330 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms