RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 AXDND1Q5T1B0 1012 aaPredicted RBP15.99■□□□□ 0.15
RTN3-210ENST00000540798 PRR5LQ6MZQ0 368 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 SASS6Q6UVJ0 657 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 ZNF654Q8IZM8 581 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 CNBD1Q8NA66 436 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 TDRD7Q8NHU6 1098 aaKnown RBP15.99■□□□□ 0.15
RTN3-210ENST00000540798 MINDY4BA8MYZ0 360 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 SLC27A3Q5K4L6 730 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 MAP3K14Q99558 947 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 TNKSO95271 1327 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 PRDX5P30044 214 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 PTPAQ15257 358 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 SBK1Q52WX2 424 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 CRACR2BQ8N4Y2 399 aaPredicted RBP15.98■□□□□ 0.15
RTN3-210ENST00000540798 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.98■□□□□ 0.15
RTN3-210ENST00000540798 SLC26A6Q9BXS9 759 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 CDK5RAP2Q96SN8 1893 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 CCDC196A0A1B0GTZ2 297 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 ORC4O43929 436 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 GYS1P13807 737 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 FANCBQ8NB91 859 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 UBAC1Q9BSL1 405 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 ATP8A2Q9NTI2 1148 aa15.98■□□□□ 0.15
RTN3-210ENST00000540798 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 UBE2Q2LH0YL09 131 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 PPP6R2O75170 966 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 ENAHQ8N8S7 591 aaPredicted RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 ZSCAN10Q96SZ4 725 aaPredicted RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 DCP1AQ9NPI6 582 aaPredicted RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 TOMM22Q9NS69 142 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 XDHP47989 1333 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 FAM237AA0A1B0GTK4 181 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 KINO60870 393 aaKnown RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 LUZP1Q86V48 1076 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 CRNKL1Q9BZJ0 848 aaKnown RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 NAV1Q8NEY1 1877 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 CYP2D7A0A087X1C5 515 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 MMP1P03956 469 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 GUCY1A2P33402 732 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 NDUFA8P51970 172 aa15.97■□□□□ 0.15
RTN3-210ENST00000540798 SPTY2D1Q68D10 685 aaPredicted RBP15.97■□□□□ 0.15
RTN3-210ENST00000540798 DDX60LQ5H9U9 1706 aaKnown RBP15.96■□□□□ 0.15
RTN3-210ENST00000540798 DEXIO95424 95 aa15.96■□□□□ 0.15
RTN3-210ENST00000540798 CMA1P23946 247 aa15.96■□□□□ 0.15
RTN3-210ENST00000540798 TRIM29Q14134 588 aa15.96■□□□□ 0.15
RTN3-210ENST00000540798 SLC51AQ86UW1 340 aa15.96■□□□□ 0.15
RTN3-210ENST00000540798 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.96■□□□□ 0.156e-7■■■□□ 15.7
RTN3-210ENST00000540798 NRXN2Q9P2S2 1712 aa15.96■□□□□ 0.15
RTN3-210ENST00000540798 FUT2Q10981 343 aa15.96■□□□□ 0.14
RTN3-210ENST00000540798 IQCB1Q15051 598 aa15.96■□□□□ 0.14
RTN3-210ENST00000540798 STX1AQ16623 288 aa15.96■□□□□ 0.14
RTN3-210ENST00000540798 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.96■□□□□ 0.14
RTN3-210ENST00000540798 MKRN1Q9UHC7 482 aaKnown RBP15.96■□□□□ 0.14
RTN3-210ENST00000540798 USP17L12C9JPN9 530 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 USP17L21D6R901 530 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 WDHD1O75717 1129 aaPredicted RBP15.95■□□□□ 0.14
RTN3-210ENST00000540798 SF3A1Q15459 793 aaKnown RBP15.95■□□□□ 0.14
RTN3-210ENST00000540798 DNAJC25Q9H1X3 360 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 AATFQ9NY61 560 aaKnown RBP eCLIP15.95■□□□□ 0.14
RTN3-210ENST00000540798 ARPP21Q9UBL0 812 aaPredicted RBP15.95■□□□□ 0.14
RTN3-210ENST00000540798 A0A1B0GVL5 298 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 ZNF165P49910 485 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 TRIM22Q8IYM9 498 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 STK11IPQ8N1F8 1099 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 WDR66Q8TBY9 1149 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 RNF26Q9BY78 433 aaPredicted RBP15.95■□□□□ 0.14
RTN3-210ENST00000540798 PRDM4Q9UKN5 801 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 MROH7-TTC4A0A0A0MT08 1334 aa15.95■□□□□ 0.14
RTN3-210ENST00000540798 CHAF1AQ13111 956 aaPredicted RBP15.94■□□□□ 0.14
RTN3-210ENST00000540798 FOXP1Q9H334 677 aaPredicted RBP15.94■□□□□ 0.14
RTN3-210ENST00000540798 HPSEQ9Y251 543 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 ANKRD31Q8N7Z5 1873 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 NT5C2P49902 561 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 NOSTRINQ8IVI9 506 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 ROBO3Q96MS0 1386 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 OFD1O75665 1012 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 PTMAP06454 111 aaKnown RBP15.94■□□□□ 0.14
RTN3-210ENST00000540798 PLA2G4DQ86XP0 818 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 ANKIB1Q9P2G1 1089 aa15.94■□□□□ 0.14
RTN3-210ENST00000540798 KLRG2A4D1S0 409 aaPredicted RBP15.93■□□□□ 0.14
RTN3-210ENST00000540798 NPHP1O15259 732 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 DDAH1O94760 285 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 TROAPQ12815 778 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 C11orf57Q6ZUT1 292 aaPredicted RBP15.93■□□□□ 0.14
RTN3-210ENST00000540798 TIGD1Q96MW7 591 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 QTRT2Q9H974 415 aaKnown RBP15.93■□□□□ 0.14
RTN3-210ENST00000540798 SERPINB2P05120 415 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 HOXA10P31260 410 aaPredicted RBP15.93■□□□□ 0.14
RTN3-210ENST00000540798 GPSM2P81274 684 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 EVX2Q03828 476 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 RBM28Q9NW13 759 aaKnown RBP15.93■□□□□ 0.14
RTN3-210ENST00000540798 FOCADQ5VW36 1801 aa15.93■□□□□ 0.14
RTN3-210ENST00000540798 CALM1P0DP23 149 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 CALM2P0DP24 149 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 CALM3P0DP25 149 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 PFKFB1P16118 471 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 ZNF804AQ7Z570 1209 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 IQCA1Q86XH1 822 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 SHISA4Q96DD7 197 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 MORC2Q9Y6X9 1032 aaPredicted RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms