RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 HDAC9Q9UKV0 1011 aa9.71□□□□□ -0.85
YBX3-208ENST00000540447 RBM8AQ9Y5S9 174 aaKnown RBP9.71□□□□□ -0.85
YBX3-208ENST00000540447 TADA3O75528 432 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 IFNAR2P48551 515 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 Q6ZUG5 572 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 LEO1Q8WVC0 666 aaPredicted RBP9.71□□□□□ -0.86
YBX3-208ENST00000540447 CCDC51Q96ER9 411 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 IFIT3O14879 490 aaKnown RBP9.71□□□□□ -0.86
YBX3-208ENST00000540447 HNRNPH1P31943 449 aaKnown RBP9.71□□□□□ -0.86
YBX3-208ENST00000540447 CCDC93Q567U6 631 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 ST7Q9NRC1 585 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 ECHDC1Q9NTX5 307 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 MIS18AQ9NYP9 233 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 PARP2Q9UGN5 583 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 CTNND1O60716 968 aaKnown RBP9.71□□□□□ -0.86
YBX3-208ENST00000540447 NOP14P78316 857 aaKnown RBP9.71□□□□□ -0.86
YBX3-208ENST00000540447 CTNND2Q9UQB3 1225 aa9.71□□□□□ -0.86
YBX3-208ENST00000540447 TMEM232C9JQI7 657 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 SLFN14P0C7P3 912 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 GJC1P36383 396 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 RNASELQ05823 741 aaKnown RBP9.7□□□□□ -0.86
YBX3-208ENST00000540447 SNX1Q13596 522 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 BRAPQ7Z569 592 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 CNNM1Q9NRU3 951 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 MKL2Q9ULH7 1088 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 LZTS1Q9Y250 596 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 HYOU1Q9Y4L1 999 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 ABCC11Q96J66 1382 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.7□□□□□ -0.86
YBX3-208ENST00000540447 NDC80O14777 642 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 DNAJC6O75061 913 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 ZNF76P36508 570 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 NCOA1Q15788 1441 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 CCDC169A6NNP5 214 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 CNGA1P29973 690 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 TBC1D8BQ0IIM8 1120 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 ALS2CLQ60I27 953 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 TEX9Q8N6V9 391 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 PDZD8Q8NEN9 1154 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 NUP58Q9BVL2 599 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 MAGEA1P43355 309 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 OLFML2BQ68BL8 750 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 MICU3Q86XE3 530 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 CCDC13Q8IYE1 715 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 LRRC2Q9BYS8 371 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 ARHGAP10A1A4S6 786 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 MSH2P43246 934 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 INPP1P49441 399 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 SLC8A3P57103 927 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 PDCLQ13371 301 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 RPS6KA1Q15418 735 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 ARL10Q8N8L6 244 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 FERMT2Q96AC1 680 aa9.7□□□□□ -0.86
YBX3-208ENST00000540447 CCDC8Q9H0W5 538 aaPredicted RBP9.7□□□□□ -0.86
YBX3-208ENST00000540447 CNOT10Q9H9A5 744 aaKnown RBP9.7□□□□□ -0.86
YBX3-208ENST00000540447 KLF18A0A0U1RQI7 1052 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 GNAT2P19087 354 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 ZNF653Q96CK0 615 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 CABP2Q9NPB3 220 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 CNGB3Q9NQW8 809 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 STOML1Q9UBI4 398 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 TPCN1Q9ULQ1 816 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 CORO7P57737 925 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 PSMC1P62191 440 aaKnown RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 MLKLQ8NB16 471 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 SNRNP27Q8WVK2 155 aaKnown RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 HINFPQ9BQA5 517 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 ARIH1Q9Y4X5 557 aaPredicted RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 SLC20A2Q08357 652 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 KIFAP3Q92845 792 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 HELLSQ9NRZ9 838 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 ASIC3Q9UHC3 531 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 SYNRGQ9UMZ2 1314 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 NFE2L3Q9Y4A8 694 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 CD2APQ9Y5K6 639 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 ZMYND10O75800 440 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 USP5P45974 858 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 ASIC1P78348 528 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 BASP1P80723 227 aaKnown RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 NAA30Q147X3 362 aaPredicted RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 STAMBPL1Q96FJ0 436 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 CCDC15Q0P6D6 951 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 NFE2L2Q16236 605 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 SLC9C1Q4G0N8 1177 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 MYLK4Q86YV6 388 aaPredicted RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 TEKT1Q969V4 418 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.69□□□□□ -0.86
YBX3-208ENST00000540447 CSRNP2Q9H175 543 aa9.69□□□□□ -0.86
YBX3-208ENST00000540447 SEC63Q9UGP8 760 aaKnown RBP9.69□□□□□ -0.86
YBX3-208ENST00000540447 H0Y3Z8 333 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 IDH1O75874 414 aaKnown RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 ARL1P40616 181 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 OCA2Q04671 838 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 LRRC8CQ8TDW0 803 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 ANKRD7Q92527 254 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 NOC4LQ9BVI4 516 aaKnown RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 KRT80Q6KB66 452 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 ZNF449Q6P9G9 518 aa9.68□□□□□ -0.86
YBX3-208ENST00000540447 HELBQ8NG08 1087 aaPredicted RBP9.68□□□□□ -0.86
YBX3-208ENST00000540447 CEP126Q9P2H0 1117 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms