RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TREML2Q5T2D2 321 aa16.75■□□□□ 0.27
SS18-204ENST00000539244 PI16Q6UXB8 463 aa16.75■□□□□ 0.27
SS18-204ENST00000539244 CHRDL2Q6WN34 429 aa16.75■□□□□ 0.27
SS18-204ENST00000539244 CCDC84Q86UT8 332 aaPredicted RBP16.75■□□□□ 0.27
SS18-204ENST00000539244 NEUROD6Q96NK8 337 aa16.75■□□□□ 0.27
SS18-204ENST00000539244 PRO3102Q9H379 93 aa16.75■□□□□ 0.27
SS18-204ENST00000539244 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.75■□□□□ 0.27
SS18-204ENST00000539244 PAK6Q9NQU5 681 aaPredicted RBP16.75■□□□□ 0.27
SS18-204ENST00000539244 FAM196BA6NMK8 535 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 TRIM27P14373 513 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 ELNP15502 786 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 MCAMP43121 646 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 TBC1D9Q6ZT07 1266 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 ANKRD13CQ8N6S4 541 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 ZNF280CQ8ND82 737 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 COA7Q96BR5 231 aa16.74■□□□□ 0.27
SS18-204ENST00000539244 RBM27Q9P2N5 1060 aaKnown RBP16.74■□□□□ 0.27
SS18-204ENST00000539244 IPO8O15397 1037 aaKnown RBP16.73■□□□□ 0.27
SS18-204ENST00000539244 GNAI2P04899 355 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 CAP2P40123 477 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 GCLCP48506 637 aaPredicted RBP16.73■□□□□ 0.27
SS18-204ENST00000539244 SPP2Q13103 211 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 SH3D19Q5HYK7 790 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 GORABQ5T7V8 394 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 HERC5Q9UII4 1024 aaKnown RBP16.73■□□□□ 0.27
SS18-204ENST00000539244 NR2E3Q9Y5X4 410 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 SIPA1L1O43166 1804 aa16.73■□□□□ 0.27
SS18-204ENST00000539244 MAST2Q6P0Q8 1798 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 PNMA6EA0A0J9YXQ4 647 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 UQCRFS1P1P0C7P4 283 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 PABPC4Q13310 644 aaKnown RBP eCLIP16.72■□□□□ 0.27
SS18-204ENST00000539244 RRP1BQ14684 758 aaKnown RBP16.72■□□□□ 0.27
SS18-204ENST00000539244 ATF7IPQ6VMQ6 1270 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 CRISPLD2Q9H0B8 497 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 RAI14Q9P0K7 980 aa16.72■□□□□ 0.27
SS18-204ENST00000539244 USP17L5A8MUK1 530 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 CCER2I3L3R5 266 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 ZBTB7BO15156 539 aaPredicted RBP16.71■□□□□ 0.27
SS18-204ENST00000539244 IGSF3O75054 1194 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 HMGCS2P54868 508 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 G3BP1Q13283 466 aaKnown RBP eCLIP16.71■□□□□ 0.27
SS18-204ENST00000539244 TEX11Q8IYF3 940 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 DEFB118Q96PH6 123 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 DHX36Q9H2U1 1008 aaKnown RBP16.71■□□□□ 0.27
SS18-204ENST00000539244 GPR108Q9NPR9 543 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 PI4KBQ9UBF8 816 aa16.71■□□□□ 0.27
SS18-204ENST00000539244 FOCADQ5VW36 1801 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 CDK5RAP2Q96SN8 1893 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 PPP4CP60510 307 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 METTL16Q86W50 562 aaKnown RBP16.7■□□□□ 0.26
SS18-204ENST00000539244 WDR18Q9BV38 432 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 AS3MTQ9HBK9 375 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 LRP2BPQ9P2M1 347 aa16.7■□□□□ 0.26
SS18-204ENST00000539244 TFRCP02786 760 aaKnown RBP16.69■□□□□ 0.26
SS18-204ENST00000539244 PLCG2P16885 1265 aa16.69■□□□□ 0.26
SS18-204ENST00000539244 POLA2Q14181 598 aa16.69■□□□□ 0.26
SS18-204ENST00000539244 SH3RF3Q8TEJ3 882 aaPredicted RBP16.69■□□□□ 0.26
SS18-204ENST00000539244 ASCC2Q9H1I8 757 aaPredicted RBP16.69■□□□□ 0.26
SS18-204ENST00000539244 MORF4L1Q9UBU8 362 aa16.69■□□□□ 0.26
SS18-204ENST00000539244 GJD2Q9UKL4 321 aa16.69■□□□□ 0.26
SS18-204ENST00000539244 TNNQ9UQP3 1299 aa16.69■□□□□ 0.26
SS18-204ENST00000539244 ALPK3Q96L96 1907 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 A0A1W2PPC1 479 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 BAG3O95817 575 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 HMGCRP04035 888 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 ASNSP08243 561 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 HOXA7P31268 230 aaPredicted RBP16.68■□□□□ 0.26
SS18-204ENST00000539244 NAA16Q6N069 864 aaPredicted RBP16.68■□□□□ 0.26
SS18-204ENST00000539244 ANKLE1Q8NAG6 615 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 ZNF512BQ96KM6 892 aaPredicted RBP16.68■□□□□ 0.26
SS18-204ENST00000539244 NOL10Q9BSC4 688 aaKnown RBP16.68■□□□□ 0.26
SS18-204ENST00000539244 GINM1Q9NU53 330 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 PLXNB2O15031 1838 aa16.68■□□□□ 0.26
SS18-204ENST00000539244 LAMA3Q16787 3333 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 EVI5O60447 810 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 BCAR3O75815 825 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 BACE1P56817 501 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 TNNI3KQ59H18 835 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 SSH3Q8TE77 659 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.67■□□□□ 0.26
SS18-204ENST00000539244 DNAJC18Q9H819 358 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 AATFQ9NY61 560 aaKnown RBP eCLIP16.67■□□□□ 0.26
SS18-204ENST00000539244 TAOK2Q9UL54 1235 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 FPGT-TNNI3KV9GXZ4 949 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 FLT1P17948 1338 aa16.67■□□□□ 0.26
SS18-204ENST00000539244 CYP2E1P05181 493 aaPredicted RBP16.66■□□□□ 0.26
SS18-204ENST00000539244 MTMR2Q13614 643 aa16.66■□□□□ 0.26
SS18-204ENST00000539244 CCDC158Q5M9N0 1113 aa16.66■□□□□ 0.26
SS18-204ENST00000539244 TTC39AQ5SRH9 613 aa16.66■□□□□ 0.26
SS18-204ENST00000539244 FOXP4Q8IVH2 680 aaPredicted RBP16.66■□□□□ 0.26
SS18-204ENST00000539244 CLUAP1Q96AJ1 413 aa16.66■□□□□ 0.26
SS18-204ENST00000539244 PAWRQ96IZ0 340 aaKnown RBP16.66■□□□□ 0.26
SS18-204ENST00000539244 MYO5AQ9Y4I1 1855 aaKnown RBP16.66■□□□□ 0.26
SS18-204ENST00000539244 RPTORQ8N122 1335 aa16.66■□□□□ 0.26
SS18-204ENST00000539244 C19orf81C9J6K1 198 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 JAG1P78504 1218 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 NECAB2Q7Z6G3 386 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 ADGRA1Q86SQ6 560 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 TMEM57Q8N5G2 664 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 TGFBRAP1Q8WUH2 860 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms