RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 PDE4BQ07343 736 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 PPM1JQ5JR12 505 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 PRSS36Q5K4E3 855 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 FBXL19Q6PCT2 694 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 BNC2Q6ZN30 1099 aaPredicted RBP7.9□□□□□ -1.14
CD44-231ENST00000531110 C12orf40Q86WS4 652 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 GOLM1Q8NBJ4 401 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 GIMAP7Q8NHV1 300 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 NT5C1AQ9BXI3 368 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 DDX41Q9UJV9 622 aaKnown RBP7.9□□□□□ -1.14
CD44-231ENST00000531110 ADAM30Q9UKF2 790 aa7.9□□□□□ -1.14
CD44-231ENST00000531110 CCDC180Q9P1Z9 1646 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 MINDY4BA8MYZ0 360 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 HCLS1P14317 486 aaPredicted RBP7.89□□□□□ -1.15
CD44-231ENST00000531110 RBM25P49756 843 aaKnown RBP7.89□□□□□ -1.15
CD44-231ENST00000531110 HDLBPQ00341 1268 aaKnown RBP7.89□□□□□ -1.15
CD44-231ENST00000531110 NFKBIBQ15653 356 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 ZAR1Q86SH2 424 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 ZNF654Q8IZM8 581 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 ZNF296Q8WUU4 475 aaPredicted RBP7.89□□□□□ -1.15
CD44-231ENST00000531110 METTL22Q9BUU2 404 aaPredicted RBP7.89□□□□□ -1.15
CD44-231ENST00000531110 PICK1Q9NRD5 415 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 C1GALT1Q9NS00 363 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 ADAMTS1Q9UHI8 967 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 DAGLAQ9Y4D2 1042 aa7.89□□□□□ -1.15
CD44-231ENST00000531110 E9PSI1 815 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 TCF3P15923 654 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 ITGB7P26010 798 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 CYP27A1Q02318 531 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 CWF19L2Q2TBE0 894 aaKnown RBP7.88□□□□□ -1.15
CD44-231ENST00000531110 REC114Q7Z4M0 266 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 KIAA0825Q8IV33 1275 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 JARID2Q92833 1246 aaPredicted RBP7.88□□□□□ -1.15
CD44-231ENST00000531110 GATA6Q92908 595 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 ZNF428Q96B54 188 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 PSMG3-AS1Q96PY0 264 aa7.88□□□□□ -1.15
CD44-231ENST00000531110 RNGTTO60942 597 aaKnown RBP7.87□□□□□ -1.15
CD44-231ENST00000531110 FAM160A1Q05DH4 1040 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 CDC37L1Q7L3B6 337 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 HID1Q8IV36 788 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.87□□□□□ -1.15
CD44-231ENST00000531110 SPATA32Q96LK8 384 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 SPON2Q9BUD6 331 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 TGIF2Q9GZN2 237 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 IGSF5Q9NSI5 407 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 CSADQ9Y600 493 aa7.87□□□□□ -1.15
CD44-231ENST00000531110 PRAMEF27A3QJZ7 478 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 F6X3S4 739 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 CDK8P49336 464 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 TAF7LQ5H9L4 462 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 TMEM201Q5SNT2 666 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 NT5DC4Q86YG4 428 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 ZDHHC13Q8IUH4 622 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 SLITRK4Q8IW52 837 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 MRPL41Q8IXM3 137 aaKnown RBP7.86□□□□□ -1.15
CD44-231ENST00000531110 REXO1Q8N1G1 1221 aaKnown RBP7.86□□□□□ -1.15
CD44-231ENST00000531110 SSU72Q9NP77 194 aaKnown RBP7.86□□□□□ -1.15
CD44-231ENST00000531110 RNF112Q9ULX5 631 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 DCAF1Q9Y4B6 1507 aa7.86□□□□□ -1.15
CD44-231ENST00000531110 LRIG2O94898 1065 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 ATE1O95260 518 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 GRK4P32298 578 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 ETF1P62495 437 aaKnown RBP7.85□□□□□ -1.15
CD44-231ENST00000531110 ZNF394Q53GI3 561 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 OGFOD3Q6PK18 319 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 TBC1D32Q96NH3 1257 aa7.85□□□□□ -1.15
CD44-231ENST00000531110 CDK11AQ9UQ88 783 aaPredicted RBP7.85□□□□□ -1.15
CD44-231ENST00000531110 DYNC1LI2O43237 492 aaPredicted RBP7.84□□□□□ -1.15
CD44-231ENST00000531110 RACK1P63244 317 aaKnown RBP7.84□□□□□ -1.15
CD44-231ENST00000531110 COL9A2Q14055 689 aaPredicted RBP7.84□□□□□ -1.15
CD44-231ENST00000531110 SLC6A19Q695T7 634 aa7.84□□□□□ -1.15
CD44-231ENST00000531110 MFSD2AQ8NA29 543 aa7.84□□□□□ -1.15
CD44-231ENST00000531110 SHKBP1Q8TBC3 707 aa7.84□□□□□ -1.15
CD44-231ENST00000531110 MFSD14AQ96MC6 490 aa7.84□□□□□ -1.15
CD44-231ENST00000531110 F13BP05160 661 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 PGRP06401 933 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 APOBRQ0VD83 1088 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 SLBPQ14493 270 aaKnown RBP eCLIP7.83□□□□□ -1.16
CD44-231ENST00000531110 CYP27C1Q4G0S4 372 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 GLIPR1L2Q4G1C9 344 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 MCATQ8IVS2 390 aaKnown RBP7.83□□□□□ -1.16
CD44-231ENST00000531110 RASGRP4Q8TDF6 673 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 FOXQ1Q9C009 403 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 EHMT1Q9H9B1 1298 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 ATG3Q9NT62 314 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.83□□□□□ -1.16
CD44-231ENST00000531110 PCDHGB7Q9Y5F8 929 aa7.83□□□□□ -1.16
CD44-231ENST00000531110 CST3P01034 146 aaPredicted RBP7.82□□□□□ -1.16
CD44-231ENST00000531110 ADMP35318 185 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 CRKP46108 304 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 GJA8P48165 433 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 RAD51AP2Q09MP3 1159 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 DUSP27Q5VZP5 1158 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 INTS5Q6P9B9 1019 aaKnown RBP7.82□□□□□ -1.16
CD44-231ENST00000531110 ARMCX6Q7L4S7 300 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 EAF1Q96JC9 268 aaPredicted RBP7.82□□□□□ -1.16
CD44-231ENST00000531110 FBRSQ9HAH7 460 aa7.82□□□□□ -1.16
CD44-231ENST00000531110 POLR3KQ9Y2Y1 108 aaPredicted RBP7.82□□□□□ -1.16
CD44-231ENST00000531110 PRR19A6NJB7 356 aa7.81□□□□□ -1.16
CD44-231ENST00000531110 WDR64B1ANS9 1081 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms