RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 TAF1LQ8IZX4 1826 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 DUOX1Q9NRD9 1551 aa9.5□□□□□ -0.89
CPNE4-211ENST00000514439 IRS2Q9Y4H2 1338 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 A0A087WWV3 80 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CCDC196A0A1B0GTZ2 297 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 WDHD1O75717 1129 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 MARCKSP29966 332 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 NFIXQ14938 502 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 IQCB1Q15051 598 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CTR9Q6PD62 1173 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 NBPF11Q86T75 865 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 SLC51AQ86UW1 340 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 TRIM22Q8IYM9 498 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CMTR1Q8N1G2 835 aaKnown RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CCDC82Q8N4S0 544 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 NUP133Q8WUM0 1156 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 ERCC4Q92889 916 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 SDF4Q9BRK5 362 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 PRDM1O75626 825 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CMA1P23946 247 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 PTPAQ15257 358 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 CRACR2BQ8N4Y2 399 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 ENAHQ8N8S7 591 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 FANCBQ8NB91 859 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 MAP3K14Q99558 947 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 ANO8Q9HCE9 1232 aaPredicted RBP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 ANO10Q9NW15 660 aa9.49□□□□□ -0.89
CPNE4-211ENST00000514439 AATFQ9NY61 560 aaKnown RBP eCLIP9.49□□□□□ -0.89
CPNE4-211ENST00000514439 AFF2P51816 1311 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 USP17L12C9JPN9 530 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 USP17L21D6R901 530 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 PPP6R2O75170 966 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 ZNF202O95125 648 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 DEXIO95424 95 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 MMP1P03956 469 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 FGRP09769 529 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 PFKFB1P16118 471 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 ZNF75DP51815 510 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 EVX2Q03828 476 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 PLA2G4DQ86XP0 818 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 NOSTRINQ8IVI9 506 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 CNBD1Q8NA66 436 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 ZSCAN10Q96SZ4 725 aaPredicted RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 CRNKL1Q9BZJ0 848 aaKnown RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 TRIM5Q9C035 493 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 LRRC4BQ9NT99 713 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 KCNJ14Q9UNX9 436 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 JAG2Q9Y219 1238 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 BAZ2AQ9UIF9 1905 aaKnown RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 GOLGA6L6A8MZA4 724 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 BTBD18B2RXH4 712 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 GOLGA6L19H0YKK7 550 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 PCP11498 1178 aaKnown RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 GRAPQ13588 217 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 DIS3L2Q8IYB7 885 aaKnown RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 SEPT12Q8IYM1 358 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 JMYQ8N9B5 988 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 GRAPLQ8TC17 118 aaPredicted RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 PIBF1Q8WXW3 757 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 KCNF1Q9H3M0 494 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 DCP1AQ9NPI6 582 aaPredicted RBP9.48□□□□□ -0.89
CPNE4-211ENST00000514439 ANKIB1Q9P2G1 1089 aa9.48□□□□□ -0.89
CPNE4-211ENST00000514439 SBF2Q86WG5 1849 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 MYH13Q9UKX3 1938 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 TPM3P06753 285 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 SAFBQ15424 915 aaKnown RBP eCLIP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 IFIT1BQ5T764 474 aaKnown RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 CEP57L1Q8IYX8 460 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 KIAA1468Q9P260 1216 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 MAST2Q6P0Q8 1798 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 ZBTB22O15209 634 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 ONECUT3O60422 494 aaPredicted RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 SHC4Q6S5L8 630 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 IQCA1Q86XH1 822 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 DHX40Q8IX18 779 aaKnown RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 FBXW7Q969H0 707 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 RNF26Q9BY78 433 aaPredicted RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 BCL11BQ9C0K0 894 aaPredicted RBP9.47□□□□□ -0.89
CPNE4-211ENST00000514439 ATP8A2Q9NTI2 1148 aa9.47□□□□□ -0.89
CPNE4-211ENST00000514439 BECN2A8MW95 431 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 ORC4O43929 436 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 SLC3A2P08195 630 aaKnown RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 PTGS1P23219 599 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 PPP2R5BQ15173 497 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 SPTY2D1Q68D10 685 aaPredicted RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 PRR5LQ6MZQ0 368 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 SARM1Q6SZW1 724 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 CATIPQ7Z7H3 387 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 DZIP1Q86YF9 867 aaKnown RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 C17orf53Q8N3J3 647 aaPredicted RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 CLIC6Q96NY7 704 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 FOXP1Q9H334 677 aaPredicted RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 ARPP21Q9UBL0 812 aaPredicted RBP9.46□□□□□ -0.9
CPNE4-211ENST00000514439 HPSEQ9Y251 543 aa9.46□□□□□ -0.9
CPNE4-211ENST00000514439 LEMD3Q9Y2U8 911 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms