RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PDZD8Q8NEN9 1154 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 JPH4Q96JJ6 628 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 OLFM3Q96PB7 478 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC8Q9H0W5 538 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 PIK3R4Q99570 1358 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 ARHGAP10A1A4S6 786 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 FAM177BA6PVY3 158 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 ATP5HO75947 161 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 EEF1DP29692 281 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 MAN1A1P33908 653 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 GJC1P36383 396 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 WDR44Q5JSH3 913 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 MCF2L2Q86YR7 1114 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC89Q8N998 374 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 LRGUKQ96M69 825 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 RNF14Q9UBS8 474 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 LMNB1P20700 586 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 KRT9P35527 623 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 TMCO5AQ8N6Q1 288 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 KIFC2Q96AC6 838 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 ORC6Q9Y5N6 252 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 A0A1B0GVL5 298 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 NCBP1Q09161 790 aaKnown RBP12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 SV2BQ7L1I2 683 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 HEATR3Q7Z4Q2 680 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 ANKRD44Q8N8A2 993 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 RABEP2Q9H5N1 569 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 BATF3Q9NR55 127 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 SAMM50Q9Y512 469 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC151A5D8V7 595 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 MARCKSP29966 332 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 CCT5P48643 541 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 C20orf194Q5TEA3 1177 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 PEX26Q7Z412 305 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC105Q8IYK2 499 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 RHPN1Q8TCX5 695 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 KLHL29Q96CT2 875 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 GLT8D2Q9H1C3 349 aa12.43□□□□□ -0.42
LIMCH1-217ENST00000512946 CTAGE3PQ8IX95 158 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 LRRC8CQ8TDW0 803 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC138Q96M89 665 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 SLC12A5Q9H2X9 1139 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 CBX8Q9HC52 389 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 APOBRQ0VD83 1088 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 CFAP70Q5T0N1 1121 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 NECAB1Q8N987 351 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 TMEM232C9JQI7 657 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 SLC12A2P55011 1212 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 SLC8A3P57103 927 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 ST5P78524 1137 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 ASPHQ12797 758 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 IFIT1BQ5T764 474 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 DHX32Q7L7V1 743 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 ZNF354CQ86Y25 554 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 SERPINB6P35237 376 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 LONP1P36776 959 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 FLIIQ13045 1269 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 CUL4BQ13620 913 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 PPP2R5BQ15173 497 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 Q6ZUG5 572 aa12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 ENAHQ8N8S7 591 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-217ENST00000512946 SYNRGQ9UMZ2 1314 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 ALDH1L1O75891 902 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 GNA14O95837 355 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 PAK1Q13153 545 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 PDXDC1Q6P996 788 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC117Q8IWD4 279 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 ZGPATQ8N5A5 531 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 KCNG1Q9UIX4 513 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 AMFRQ9UKV5 643 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 ANKRD36BQ8N2N9 1353 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 CALUO43852 315 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 FNBP4Q8N3X1 1017 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 KCNH5Q8NCM2 988 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 EIF3DO15371 548 aaKnown RBP eCLIP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 DDX54Q8TDD1 881 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 AFG3L2Q9Y4W6 797 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 NBPF14Q5TI25 921 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 RSBN1LQ6PCB5 846 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 RMDN2Q96LZ7 410 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 IWS1Q96ST2 819 aa12.41□□□□□ -0.42
LIMCH1-217ENST00000512946 PYGBP11216 843 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 EPHB4P54760 987 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 STX17P56962 302 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 HSP90AA4PQ58FG1 418 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 MUM1L1Q5H9M0 696 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 KRT80Q6KB66 452 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 PSPC1Q8WXF1 523 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 SERPINI1Q99574 410 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 JPH2Q9BR39 696 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 TEX13AQ9BXU3 409 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 GIMAP4Q9NUV9 329 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 INTS9Q9NV88 658 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 TRAF5O00463 557 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 RAP1GDS1P52306 607 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 ALS2CLQ60I27 953 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 CCDC13Q8IYE1 715 aa12.4□□□□□ -0.42
LIMCH1-217ENST00000512946 OR8K1Q8NGG5 319 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms