RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 SHISA4Q96DD7 197 aa27.14■■□□□ 1.94
HDDC3-203ENST00000494993 FPGT-TNNI3KV9GXZ4 949 aa27.14■■□□□ 1.94
HDDC3-203ENST00000494993 OS9Q13438 667 aaPredicted RBP27.13■■□□□ 1.93
HDDC3-203ENST00000494993 TTC39AQ5SRH9 613 aa27.13■■□□□ 1.93
HDDC3-203ENST00000494993 SMCR8Q8TEV9 937 aaPredicted RBP27.13■■□□□ 1.93
HDDC3-203ENST00000494993 DBNDD2Q9BQY9 259 aa27.13■■□□□ 1.93
HDDC3-203ENST00000494993 NOL10Q9BSC4 688 aaKnown RBP27.13■■□□□ 1.93
HDDC3-203ENST00000494993 SNRKQ9NRH2 765 aa27.13■■□□□ 1.93
HDDC3-203ENST00000494993 GABRQQ9UN88 632 aa27.13■■□□□ 1.93
HDDC3-203ENST00000494993 CCDC158Q5M9N0 1113 aa27.12■■□□□ 1.93
HDDC3-203ENST00000494993 SH3RF3Q8TEJ3 882 aaPredicted RBP27.12■■□□□ 1.93
HDDC3-203ENST00000494993 CCL5P13501 91 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 UBXN2AP68543 259 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 TREML2Q5T2D2 321 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 NAA16Q6N069 864 aaPredicted RBP27.11■■□□□ 1.93
HDDC3-203ENST00000494993 PROCA1Q8NCQ7 364 aaPredicted RBP27.11■■□□□ 1.93
HDDC3-203ENST00000494993 SLAIN1Q8ND83 568 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 NKX2-3Q8TAU0 364 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 TBC1D2Q9BYX2 928 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 C1orf115Q9H7X2 142 aa27.11■■□□□ 1.93
HDDC3-203ENST00000494993 BIN2Q9UBW5 565 aaPredicted RBP27.11■■□□□ 1.93
HDDC3-203ENST00000494993 SURF6O75683 361 aaKnown RBP27.1■■□□□ 1.93
HDDC3-203ENST00000494993 CAP2P40123 477 aa27.1■■□□□ 1.93
HDDC3-203ENST00000494993 ZNF280CQ8ND82 737 aa27.1■■□□□ 1.93
HDDC3-203ENST00000494993 AATFQ9NY61 560 aaKnown RBP eCLIP27.1■■□□□ 1.93
HDDC3-203ENST00000494993 HERC5Q9UII4 1024 aaKnown RBP27.1■■□□□ 1.93
HDDC3-203ENST00000494993 PNMA3Q9UL41 463 aa27.1■■□□□ 1.93
HDDC3-203ENST00000494993 MYH1P12882 1939 aa27.1■■□□□ 1.93
HDDC3-203ENST00000494993 BAG3O95817 575 aa27.09■■□□□ 1.93
HDDC3-203ENST00000494993 GJB1P08034 283 aa27.09■■□□□ 1.93
HDDC3-203ENST00000494993 GJA8P48165 433 aa27.09■■□□□ 1.93
HDDC3-203ENST00000494993 HNRNPUQ00839 825 aaKnown RBP eCLIP27.09■■□□□ 1.93
HDDC3-203ENST00000494993 SPP2Q13103 211 aa27.09■■□□□ 1.93
HDDC3-203ENST00000494993 RRP1BQ14684 758 aaKnown RBP27.09■■□□□ 1.93
HDDC3-203ENST00000494993 FTSJ3Q8IY81 847 aaKnown RBP27.09■■□□□ 1.93
HDDC3-203ENST00000494993 RNF208Q9H0X6 261 aa27.09■■□□□ 1.93
HDDC3-203ENST00000494993 TNPO2O14787 897 aaKnown RBP27.08■■□□□ 1.93
HDDC3-203ENST00000494993 CYP2E1P05181 493 aaPredicted RBP27.08■■□□□ 1.93
HDDC3-203ENST00000494993 PLCG2P16885 1265 aa27.08■■□□□ 1.93
HDDC3-203ENST00000494993 FLT3LGP49771 235 aa27.08■■□□□ 1.93
HDDC3-203ENST00000494993 ZNF512BQ96KM6 892 aaPredicted RBP27.08■■□□□ 1.93
HDDC3-203ENST00000494993 PI4KBQ9UBF8 816 aa27.08■■□□□ 1.93
HDDC3-203ENST00000494993 USP17L5A8MUK1 530 aa27.07■■□□□ 1.92
HDDC3-203ENST00000494993 ADCY3O60266 1144 aa27.07■■□□□ 1.92
HDDC3-203ENST00000494993 PPP4CP60510 307 aa27.07■■□□□ 1.92
HDDC3-203ENST00000494993 ITPRIPQ8IWB1 547 aa27.07■■□□□ 1.92
HDDC3-203ENST00000494993 ANKRD13CQ8N6S4 541 aa27.07■■□□□ 1.92
HDDC3-203ENST00000494993 DHX36Q9H2U1 1008 aaKnown RBP27.07■■□□□ 1.92
HDDC3-203ENST00000494993 NOP58Q9Y2X3 529 aaKnown RBP27.07■■□□□ 1.92
HDDC3-203ENST00000494993 HMGCS2P54868 508 aa27.06■■□□□ 1.92
HDDC3-203ENST00000494993 FAM110CQ1W6H9 321 aa27.06■■□□□ 1.92
HDDC3-203ENST00000494993 ADGRA1Q86SQ6 560 aa27.06■■□□□ 1.92
HDDC3-203ENST00000494993 ZBTB7BO15156 539 aaPredicted RBP27.05■■□□□ 1.92
HDDC3-203ENST00000494993 IGSF3O75054 1194 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 RLBP1P12271 317 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 ZAP70P43403 619 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 IRF5Q13568 498 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 MAPKAPK5Q8IW41 473 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 PXYLP1Q8TE99 480 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 TGFBRAP1Q8WUH2 860 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 UNC93B1Q9H1C4 597 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 AS3MTQ9HBK9 375 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 DBNLQ9UJU6 430 aaKnown RBP27.05■■□□□ 1.92
HDDC3-203ENST00000494993 FLT1P17948 1338 aa27.05■■□□□ 1.92
HDDC3-203ENST00000494993 PABPC4Q13310 644 aaKnown RBP eCLIP27.04■■□□□ 1.925e-6■■■□□ 19
HDDC3-203ENST00000494993 SH3D19Q5HYK7 790 aa27.04■■□□□ 1.92
HDDC3-203ENST00000494993 H0YGN5 161 aa27.03■■□□□ 1.92
HDDC3-203ENST00000494993 ELNP15502 786 aa27.03■■□□□ 1.92
HDDC3-203ENST00000494993 UBE2Q1Q7Z7E8 422 aa27.03■■□□□ 1.92
HDDC3-203ENST00000494993 COA7Q96BR5 231 aa27.03■■□□□ 1.92
HDDC3-203ENST00000494993 PIH1D3Q9NQM4 214 aaKnown RBP27.03■■□□□ 1.92
HDDC3-203ENST00000494993 TLR7Q9NYK1 1049 aaKnown RBP27.03■■□□□ 1.92
HDDC3-203ENST00000494993 PLXNB2O15031 1838 aa27.02■■□□□ 1.92
HDDC3-203ENST00000494993 INHAP05111 366 aa27.02■■□□□ 1.92
HDDC3-203ENST00000494993 GCLCP48506 637 aaPredicted RBP27.02■■□□□ 1.92
HDDC3-203ENST00000494993 U2AF1L4Q8WU68 220 aaKnown RBP27.02■■□□□ 1.92
HDDC3-203ENST00000494993 CCDC8Q9H0W5 538 aaPredicted RBP27.02■■□□□ 1.92
HDDC3-203ENST00000494993 DNAJC18Q9H819 358 aa27.02■■□□□ 1.92
HDDC3-203ENST00000494993 COLQQ9Y215 455 aaPredicted RBP27.02■■□□□ 1.92
HDDC3-203ENST00000494993 TRIOBPQ9H2D6 2365 aa27.01■■□□□ 1.92
HDDC3-203ENST00000494993 ASNSP08243 561 aa27.01■■□□□ 1.91
HDDC3-203ENST00000494993 METTL16Q86W50 562 aaKnown RBP27.01■■□□□ 1.91
HDDC3-203ENST00000494993 FOXP4Q8IVH2 680 aaPredicted RBP27.01■■□□□ 1.91
HDDC3-203ENST00000494993 EAF2Q96CJ1 260 aaPredicted RBP27.01■■□□□ 1.91
HDDC3-203ENST00000494993 WDR18Q9BV38 432 aa27.01■■□□□ 1.91
HDDC3-203ENST00000494993 ASCC2Q9H1I8 757 aaPredicted RBP27.01■■□□□ 1.91
HDDC3-203ENST00000494993 DPF3Q92784 378 aa27■■□□□ 1.91
HDDC3-203ENST00000494993 PALD1Q9ULE6 856 aa27■■□□□ 1.91
HDDC3-203ENST00000494993 SGPL1O95470 568 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 MTMR2Q13614 643 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 MIER1Q8N108 512 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 CRACR2BQ8N4Y2 399 aaPredicted RBP26.99■■□□□ 1.91
HDDC3-203ENST00000494993 HTATIP2Q9BUP3 242 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 TRIM34Q9BYJ4 488 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 TAOK2Q9UL54 1235 aa26.99■■□□□ 1.91
HDDC3-203ENST00000494993 CYP7A1P22680 504 aa26.98■■□□□ 1.91
HDDC3-203ENST00000494993 FXR1P51114 621 aaKnown RBP eCLIP26.98■■□□□ 1.91
HDDC3-203ENST00000494993 BACE1P56817 501 aa26.98■■□□□ 1.91
HDDC3-203ENST00000494993 DYNLL1P63167 89 aaKnown RBP26.98■■□□□ 1.91
HDDC3-203ENST00000494993 JAG1P78504 1218 aa26.98■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms