RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SH3BP5LQ7L8J4 393 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 CRACR2BQ8N4Y2 399 aaPredicted RBP16.48■□□□□ 0.23
C9orf3-221ENST00000489562 STAG1Q8WVM7 1258 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 TEPSINQ96N21 525 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 TRIM34Q9BYJ4 488 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 C22orf23Q9BZE7 217 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 SWAP70Q9UH65 585 aa16.48■□□□□ 0.23
C9orf3-221ENST00000489562 CYP2D7A0A087X1C5 515 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 TBC1D12O60347 775 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 CYP2D6P10635 497 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 RBM25P49756 843 aaKnown RBP16.47■□□□□ 0.23
C9orf3-221ENST00000489562 PLCD1P51178 756 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 HAND2P61296 217 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 AKNAD1Q5T1N1 836 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 C16orf86Q6ZW13 317 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 METTL16Q86W50 562 aaKnown RBP16.47■□□□□ 0.23
C9orf3-221ENST00000489562 CNNM2Q9H8M5 875 aa16.47■□□□□ 0.23
C9orf3-221ENST00000489562 NF2P35240 595 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 CTDSPL2Q05D32 466 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 GABPAQ06546 454 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 TRDNQ13061 729 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 DCAF15Q66K64 600 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 CHADLQ6NUI6 762 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 MFSD6Q6ZSS7 791 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 IL17RAQ96F46 866 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 TBC1D32Q96NH3 1257 aa16.46■□□□□ 0.23
C9orf3-221ENST00000489562 ATAD5Q96QE3 1844 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 ADM5C9JUS6 153 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 ORC4O43929 436 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 FGRP09769 529 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 POTEIP0CG38 1075 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 POTEJP0CG39 1038 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 MAP3K10Q02779 954 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 SLC4A8Q2Y0W8 1093 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 USP48Q86UV5 1035 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 TBC1D10CQ8IV04 446 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 KRT23Q9C075 422 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 NBPF3Q9H094 633 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 SCAF8Q9UPN6 1271 aaKnown RBP16.45■□□□□ 0.22
C9orf3-221ENST00000489562 SNX14Q9Y5W7 946 aa16.45■□□□□ 0.22
C9orf3-221ENST00000489562 E7EWF7 191 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 KIF3CO14782 793 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 PSMA5P28066 241 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 CDK8P49336 464 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 MAP1SQ66K74 1059 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-221ENST00000489562 RALYLQ86SE5 291 aaKnown RBP16.44■□□□□ 0.22
C9orf3-221ENST00000489562 RASEFQ8IZ41 740 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 NCOA7Q8NI08 942 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 CDCA5Q96FF9 252 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 GLIS2Q9BZE0 524 aaPredicted RBP16.44■□□□□ 0.22
C9orf3-221ENST00000489562 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.44■□□□□ 0.22
C9orf3-221ENST00000489562 MKNK2Q9HBH9 465 aa16.44■□□□□ 0.22
C9orf3-221ENST00000489562 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.44■□□□□ 0.22
C9orf3-221ENST00000489562 GREB1LQ9C091 1923 aaPredicted RBP16.43■□□□□ 0.22
C9orf3-221ENST00000489562 HMGB1P09429 215 aaKnown RBP16.43■□□□□ 0.22
C9orf3-221ENST00000489562 NBPF12Q5TAG4 269 aaPredicted RBP16.43■□□□□ 0.22
C9orf3-221ENST00000489562 IL27Q8NEV9 243 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 ESR2Q92731 530 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 DYNLL2Q96FJ2 89 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 CCDC17Q96LX7 622 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 TM6SF1Q9BZW5 370 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 DOCK1Q14185 1865 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 SSC5DA1L4H1 1573 aa16.43■□□□□ 0.22
C9orf3-221ENST00000489562 PAPPA2Q9BXP8 1791 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 SHMT1P34896 483 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 EVX2Q03828 476 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 TATDN1Q6P1N9 297 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 CDAN1Q8IWY9 1227 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 ZNF784Q8NCA9 323 aaPredicted RBP16.42■□□□□ 0.22
C9orf3-221ENST00000489562 NEK1Q96PY6 1258 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 ZNF341Q9BYN7 854 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 DNAJC18Q9H819 358 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 TOMM22Q9NS69 142 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 NEDD4P46934 1319 aa16.42■□□□□ 0.22
C9orf3-221ENST00000489562 OTOFQ9HC10 1997 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 SMIM22K7EJ46 135 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 PPP1R12BO60237 982 aaPredicted RBP16.41■□□□□ 0.22
C9orf3-221ENST00000489562 STOX1Q6ZVD7 989 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 ZNF444Q8N0Y2 327 aaPredicted RBP16.41■□□□□ 0.22
C9orf3-221ENST00000489562 SLC44A5Q8NCS7 719 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 SMC1BQ8NDV3 1235 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 RBM46Q8TBY0 533 aaKnown RBP16.41■□□□□ 0.22
C9orf3-221ENST00000489562 JAKMIP1Q96N16 626 aaKnown RBP16.41■□□□□ 0.22
C9orf3-221ENST00000489562 GINM1Q9NU53 330 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 TAF6LQ9Y6J9 622 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 WDR19Q8NEZ3 1342 aa16.41■□□□□ 0.22
C9orf3-221ENST00000489562 PLIN4Q96Q06 1357 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 TOMM70O94826 608 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 RASA1P20936 1047 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 CERKLQ49MI3 558 aaPredicted RBP16.4■□□□□ 0.22
C9orf3-221ENST00000489562 RRP12Q5JTH9 1297 aaKnown RBP16.4■□□□□ 0.22
C9orf3-221ENST00000489562 PRAMEF18Q5VWM3 479 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 BLOC1S2Q6QNY1 142 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 MIGA2Q7L4E1 593 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 STK11IPQ8N1F8 1099 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 MTA3Q9BTC8 594 aa16.4■□□□□ 0.22
C9orf3-221ENST00000489562 MYH4Q9Y623 1939 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 TSPY2A6NKD2 308 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 FAM196BA6NMK8 535 aa16.39■□□□□ 0.21
C9orf3-221ENST00000489562 B4E1Z4 1266 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms