RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 PLIN4Q96Q06 1357 aa13.54□□□□□ -0.24
C9orf3-220ENST00000489318 PFKFB2O60825 505 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 ENTPD3O75355 529 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 HSP90AA1P07900 732 aaKnown RBP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 YBX3P16989 372 aaKnown RBP eCLIP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 PLCD1P51178 756 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 EIF6P56537 245 aaKnown RBP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 GABPAQ06546 454 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 NFIAQ12857 509 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 CHST3Q7LGC8 479 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 OGFOD1Q8N543 542 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 PRMT6Q96LA8 375 aaPredicted RBP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 SLKQ9H2G2 1235 aaPredicted RBP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 LY9Q9HBG7 655 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 CWC22Q9HCG8 908 aaKnown RBP13.53□□□□□ -0.24
C9orf3-220ENST00000489318 INCENPQ9NQS7 918 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 FAM198AQ9UFP1 575 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 ZNF541Q9H0D2 1346 aa13.53□□□□□ -0.24
C9orf3-220ENST00000489318 POLR3DP05423 398 aaPredicted RBP13.52□□□□□ -0.25
C9orf3-220ENST00000489318 RCAN1P53805 252 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 SEC23AQ15436 765 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 SPDYE2Q495Y8 402 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 FKBP1CQ5VVH2 108 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 TTC6Q86TZ1 520 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 DHX36Q9H2U1 1008 aaKnown RBP13.52□□□□□ -0.25
C9orf3-220ENST00000489318 ZNF287Q9HBT7 754 aa13.52□□□□□ -0.25
C9orf3-220ENST00000489318 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.52□□□□□ -0.25
C9orf3-220ENST00000489318 TNKSO95271 1327 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 PDIA3P30101 505 aaKnown RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 RBM5P52756 815 aaKnown RBP eCLIP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 FGD1P98174 961 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 APOBRQ0VD83 1088 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 PICALMQ13492 652 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 SART3Q15020 963 aaKnown RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 DLGAP5Q15398 846 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 RRP12Q5JTH9 1297 aaKnown RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 ARHGAP27Q6ZUM4 889 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 SPRYD3Q8NCJ5 442 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 LARP6Q9BRS8 491 aaKnown RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 GPHNQ9NQX3 736 aaPredicted RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 CHMP5Q9NZZ3 219 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 SAP30BPQ9UHR5 308 aaKnown RBP13.51□□□□□ -0.25
C9orf3-220ENST00000489318 BRPF3Q9ULD4 1205 aa13.51□□□□□ -0.25
C9orf3-220ENST00000489318 PRDM1O75626 825 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 RASA1P20936 1047 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 SCRN1Q12765 414 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 TMEM67Q5HYA8 995 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 APOA5Q6Q788 366 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 METTL16Q86W50 562 aaKnown RBP13.5□□□□□ -0.25
C9orf3-220ENST00000489318 CCDC83Q8IWF9 413 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 GPC2Q8N158 579 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 CHMP4CQ96CF2 233 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 DYNLL2Q96FJ2 89 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 ZSCAN10Q96SZ4 725 aaPredicted RBP13.5□□□□□ -0.25
C9orf3-220ENST00000489318 TDRD3Q9H7E2 651 aaKnown RBP13.5□□□□□ -0.25
C9orf3-220ENST00000489318 MYOZ2Q9NPC6 264 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 TOMM22Q9NS69 142 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 TCP11L1Q9NUJ3 509 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 SWAP70Q9UH65 585 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 HPS5Q9UPZ3 1129 aa13.5□□□□□ -0.25
C9orf3-220ENST00000489318 CNTNAP1P78357 1384 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 ZC3H4Q9UPT8 1303 aaKnown RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 KLF18A0A0U1RQI7 1052 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 WNT10BO00744 389 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 SOCS7O14512 581 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 IFIT3O14879 490 aaKnown RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 HLA-DOAP06340 250 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 CDK8P49336 464 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 GMPSP49915 693 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 WTAPQ15007 396 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 SH3BP5LQ7L8J4 393 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 IQCA1Q86XH1 822 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 TMTC2Q8N394 836 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 ENAHQ8N8S7 591 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 NECAB1Q8N987 351 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 SLC44A5Q8NCS7 719 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 SMARCC2Q8TAQ2 1214 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 ANKS1AQ92625 1134 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 LLPHQ9BRT6 129 aaKnown RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 UBAC1Q9BSL1 405 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 TMOD2Q9NZR1 351 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 ZNF70Q9UC06 446 aaPredicted RBP13.49□□□□□ -0.25
C9orf3-220ENST00000489318 SERPINB13Q9UIV8 391 aa13.49□□□□□ -0.25
C9orf3-220ENST00000489318 ERICH2A1L162 156 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 TSPY2A6NKD2 308 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 GOLGA8BA8MQT2 603 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 RANBP6O60518 1105 aaKnown RBP13.48□□□□□ -0.25
C9orf3-220ENST00000489318 NOVP48745 357 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 CACNB3P54284 484 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 CCDC178Q5BJE1 867 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 FAM83AQ86UY5 434 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 ZFPM1Q8IX07 1006 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 MICALL2Q8IY33 904 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 STK11IPQ8N1F8 1099 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 FAM151AQ8WW52 585 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 DNAJC18Q9H819 358 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 SENP2Q9HC62 589 aa13.48□□□□□ -0.25
C9orf3-220ENST00000489318 GOLGB1Q14789 3259 aaKnown RBP13.47□□□□□ -0.25
C9orf3-220ENST00000489318 MYH4Q9Y623 1939 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms