RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FAM163AQ96GL9 167 aaPredicted RBP17.13■□□□□ 0.33
SQSTM1-208ENST00000485412 FOCADQ5VW36 1801 aa17.12■□□□□ 0.33
SQSTM1-208ENST00000485412 DLL1O00548 723 aa17.12■□□□□ 0.33
SQSTM1-208ENST00000485412 RRP1BQ14684 758 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-208ENST00000485412 ANKRD13CQ8N6S4 541 aa17.12■□□□□ 0.33
SQSTM1-208ENST00000485412 NEUROD6Q96NK8 337 aa17.12■□□□□ 0.33
SQSTM1-208ENST00000485412 GPR75-ASB3A0A0A6YYF3 556 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 CTNND1O60716 968 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 GNAI3P08754 354 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 MVPQ14764 893 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 SLF2Q8IX21 1173 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 ARHGAP45Q92619 1136 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 CLUAP1Q96AJ1 413 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 PAWRQ96IZ0 340 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 PAK6Q9NQU5 681 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 STAP2Q9UGK3 403 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 PNMA3Q9UL41 463 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 AGTPBP1Q9UPW5 1226 aa17.11■□□□□ 0.33
SQSTM1-208ENST00000485412 SOX1O00570 391 aaPredicted RBP17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 MCAMP43121 646 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 TREML2Q5T2D2 321 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 ERICH6Q7L0X2 663 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 NECAB2Q7Z6G3 386 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 SPATA5Q8NB90 893 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 NSUN4Q96CB9 384 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 LRCH3Q96II8 777 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 PLXNB2O15031 1838 aa17.1■□□□□ 0.33
SQSTM1-208ENST00000485412 SPTY2D1Q68D10 685 aaPredicted RBP17.09■□□□□ 0.33
SQSTM1-208ENST00000485412 FRAT1Q92837 279 aaPredicted RBP17.09■□□□□ 0.33
SQSTM1-208ENST00000485412 CRISPLD2Q9H0B8 497 aa17.09■□□□□ 0.33
SQSTM1-208ENST00000485412 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.09■□□□□ 0.335e-28■■■■■ 27.6
SQSTM1-208ENST00000485412 HDAC5Q9UQL6 1122 aa17.09■□□□□ 0.33
SQSTM1-208ENST00000485412 AKAP2Q9Y2D5 859 aa17.09■□□□□ 0.33
SQSTM1-208ENST00000485412 ARID4AP29374 1257 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-208ENST00000485412 FAM110CQ1W6H9 321 aa17.08■□□□□ 0.32
SQSTM1-208ENST00000485412 C7orf61Q8IZ16 206 aa17.08■□□□□ 0.32
SQSTM1-208ENST00000485412 SNRKQ9NRH2 765 aa17.08■□□□□ 0.32
SQSTM1-208ENST00000485412 COL2A1P02458 1487 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 GNAI2P04899 355 aa17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 SHROOM1Q2M3G4 852 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 ATF7IPQ6VMQ6 1270 aa17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 TMEM57Q8N5G2 664 aa17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 PROCA1Q8NCQ7 364 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 SH3RF3Q8TEJ3 882 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 DIS3LQ8TF46 1054 aaKnown RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
SQSTM1-208ENST00000485412 LAMA3Q16787 3333 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 CCER2I3L3R5 266 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 HMGCRP04035 888 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 GCLCP48506 637 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 JAG1P78504 1218 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 PABPC4Q13310 644 aaKnown RBP eCLIP17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 GORABQ5T7V8 394 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 ADGRA1Q86SQ6 560 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 ANKLE1Q8NAG6 615 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 C1orf115Q9H7X2 142 aa17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 ZMYND8Q9ULU4 1186 aaPredicted RBP17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 DDX60LQ5H9U9 1706 aaKnown RBP17.06■□□□□ 0.32
SQSTM1-208ENST00000485412 TBC1D12O60347 775 aa17.05■□□□□ 0.32
SQSTM1-208ENST00000485412 SPP2Q13103 211 aa17.05■□□□□ 0.32
SQSTM1-208ENST00000485412 HMX1Q9NP08 348 aaPredicted RBP17.05■□□□□ 0.32
SQSTM1-208ENST00000485412 MYH1P12882 1939 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 PEX10O60683 326 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 NPM3O75607 178 aaKnown RBP17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 BMP8BP34820 402 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 HMGCS2P54868 508 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 TEX11Q8IYF3 940 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 ZNF280CQ8ND82 737 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 DBNDD2Q9BQY9 259 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 NBPF3Q9H094 633 aa17.04■□□□□ 0.32
SQSTM1-208ENST00000485412 RPTORQ8N122 1335 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 G3BP1Q13283 466 aaKnown RBP eCLIP17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 GDF15Q99988 308 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 TBC1D2Q9BYX2 928 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 DNAJC18Q9H819 358 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 AATFQ9NY61 560 aaKnown RBP eCLIP17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 LRP2BPQ9P2M1 347 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 COL6A3P12111 3177 aa17.03■□□□□ 0.32
SQSTM1-208ENST00000485412 IPO8O15397 1037 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 LDHCP07864 332 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 CAP2P40123 477 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 GSTO1P78417 241 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 POLA2Q14181 598 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 TNNI3KQ59H18 835 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 ASCC2Q9H1I8 757 aaPredicted RBP17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 C11orf49Q9H6J7 331 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 TLR7Q9NYK1 1049 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 FPGT-TNNI3KV9GXZ4 949 aa17.02■□□□□ 0.32
SQSTM1-208ENST00000485412 USP17L5A8MUK1 530 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 CYP2E1P05181 493 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 RLBP1P12271 317 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 SYN1P17600 705 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 TRIM32Q13049 653 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 GPR153Q6NV75 609 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 MAPKAPK5Q8IW41 473 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 DEFB123Q8N688 67 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 AS3MTQ9HBK9 375 aa17.01■□□□□ 0.31
SQSTM1-208ENST00000485412 PIH1D3Q9NQM4 214 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms